View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10615_high_1 (Length: 467)
Name: NF10615_high_1
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Complemental strand, 42798790 - 42798349
Alignment:
| Q |
14 |
cataattaacaacagtctctctcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaacccttctaaaactccccacaatt |
113 |
Q |
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| T |
42798790 |
cataattaacaacagtctctctcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaacccttctaaaactccccacaatt |
42798691 |
T |
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| Q |
114 |
ctgcctcaagctccactcaacggcccatgttaaacattttgaaaagcaacagatccagttactgtgattatcccaaagttagccatcacaactggattac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42798690 |
ctgcctcaagctccactcaacggcccatgttaaacattttgaaaagcaacagatccagttactgtgattatcccaaagttagccatcgcaactggattac |
42798591 |
T |
|
| Q |
214 |
attcaaagtctattagctccatatatacgtctgaaccctcttgctctacacttccctgcctgtcatggatcaagattttcctaattctgctacgcaaccc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42798590 |
attcaaagtctattagctccatatatacgtctgaaccctcttgctctacacttccctgcctgtcatggatcttgattttcctaattctgctacgcaaccc |
42798491 |
T |
|
| Q |
314 |
caataatagggagcattataacagcagattggaaaagaaaggtctaaatgaacttataactacattaactacaatgttgacaaagtagtaacatgttcca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42798490 |
caataatagggagcattataacagcagattggaaaagaaaggtctaaatgaacttataactacattaactacaatgttgacaaagtagtaacatcttcca |
42798391 |
T |
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| Q |
414 |
atattaatatgtgattctatcatgtctgctaaattttaatct |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798390 |
atattaatatgtgattctatcatgtctgctaaattttaatct |
42798349 |
T |
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