View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10615_low_12 (Length: 234)
Name: NF10615_low_12
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_low_12 |
 | |
|
| [»] scaffold0242 (2 HSPs) |
| | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
| [»] scaffold0867 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 18)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 29922221 - 29922023
Alignment:
| Q |
16 |
gaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29922221 |
gaatattacagttgaacattttgttatcgtttctcttgatttagggacggagacatacaatcaatatctgttgcctc------ttgatgaagtgccatct |
29922128 |
T |
|
| Q |
116 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29922127 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatg |
29922028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 29881094 - 29881296
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
||||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||||||||||| |||||| |||||||||| |||||| |||| |
|
|
| T |
29881094 |
atattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaatcaatatcgactgcctccgagttttgatgaggtgccacctgc |
29881193 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa |
217 |
Q |
| |
|
| ||||| ||||||||||||| || ||||||||| |||| ||||| |||||| |||||||||||| || | ||||| |||||||||||||||| |||| |
|
|
| T |
29881194 |
acgaccaattgttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaa |
29881293 |
T |
|
| Q |
218 |
gat |
220 |
Q |
| |
|
||| |
|
|
| T |
29881294 |
gat |
29881296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 29885086 - 29885271
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
|||| ||||||| || |||||||| || || |||||||| | |||||||||||| || || || ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
29885086 |
atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt |
29885185 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaaga |
203 |
Q |
| |
|
|| ||||| |||||||| | ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29885186 |
ggagccaacatttggtgtgctagggggctgcctttgtttttcttatttttccaaggaaactgattttgttatatggcagatgaaga |
29885271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 29454337 - 29454133
Alignment:
| Q |
16 |
gaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatct |
115 |
Q |
| |
|
|||||| |||||||| || |||||||| | || |||||||| ||||| ||||| |||||| | || | |||||||||| ||||||||| |||||| || |
|
|
| T |
29454337 |
gaatatcacagttgagcagtttgttattatttcacttgatttggggactgagacgtacaataagtaccaattgcctcgtgattttgatgaggtgccacct |
29454238 |
T |
|
| Q |
116 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatg |
215 |
Q |
| |
|
| || ||||| |||||||| |||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||| ||||| ||||||||| | || |
|
|
| T |
29454237 |
gaagctccaacggttggtgttttggggggaagcctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttg |
29454138 |
T |
|
| Q |
216 |
aagat |
220 |
Q |
| |
|
||||| |
|
|
| T |
29454137 |
aagat |
29454133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 29867077 - 29867276
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
||||||| ||||| || |||||||| || || |||||||| ||||| |||| |||||||||||| | |||||| |||||||||| ||||| ||||| |
|
|
| T |
29867077 |
atattactgttgaccagtttgttattgtttcacttgatttggggactgagaaatacaatcaataccgactgcctccaagttttgatgaggtgccgtctgc |
29867176 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa |
217 |
Q |
| |
|
| | || | |||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||| ||||||||||| |||| |||| |
|
|
| T |
29867177 |
atatcctattgttggtgtgttgggggactgcctttgtttttcttattct---aaggaaactgattttattatatggcaaatgaagaaattcggggttgaa |
29867273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 29899206 - 29899413
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
|||| ||||||| || |||||||| || || |||||||| | |||||||||||| || || || ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
29899206 |
atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt |
29899305 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaac------tgattttgttatatggcagatgaagaaatttggg |
211 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||| || |||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
29899306 |
ggagccaacatttggtgtgttggggggctgcctttgtttttcttgtttttacaataataccaattttgattttgttatatggcagatgaagaaatttggg |
29899405 |
T |
|
| Q |
212 |
gatgaaga |
219 |
Q |
| |
|
| |||||| |
|
|
| T |
29899406 |
gttgaaga |
29899413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 29106646 - 29106853
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
|||||||||||| || |||||||| || || ||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||| || |
|
|
| T |
29106646 |
atattacagttggtcaatttgttattgtttcacttgattggaggatggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaa |
29106745 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaac------tgattttgttatatggcagatgaagaaatttggg |
211 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
29106746 |
acggccaacagttggtgtgttggggggctgcctttgtttttcttatttatacgtaaaaacagattttgattttgttgtatggcagatgaagaaatttggg |
29106845 |
T |
|
| Q |
212 |
gatgaaga |
219 |
Q |
| |
|
| |||||| |
|
|
| T |
29106846 |
gttgaaga |
29106853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 29476574 - 29476374
Alignment:
| Q |
16 |
gaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatct |
115 |
Q |
| |
|
|||| ||| |||||| || |||||||| || || || |||||||| || ||||||||||||||||| | ||||||||| |||||||||| |||||||| |
|
|
| T |
29476574 |
gaatcttagagttgagcagtttgttattgtttcactcgatttaggaactgagacatacaatcaataccgtctgcctcgtgattttgatgaaatgccatct |
29476475 |
T |
|
| Q |
116 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatg |
215 |
Q |
| |
|
|| |||| |||| |||||||||||||| |||||||| ||| |||| |||||| ||||| |||||| ||||||||||||||||| |||| ||| ||| |
|
|
| T |
29476474 |
gccctgccaattgttgctgtgttggggggcttcctttgttgttcctatttttacaaggaaaccgattttcttatatggcagatgaaggaattagggaatg |
29476375 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
|
| |
|
|
| T |
29476374 |
a |
29476374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 29920270 - 29920086
Alignment:
| Q |
23 |
acagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaac |
122 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||| ||||| ||||| ||| |||| ||| | |||| ||||| ||||||||||||||| || ||||| |
|
|
| T |
29920270 |
acagttgaacaatttgttattgtttctctccatttggggacagagacctaccatcagtatttactgccccgtggatttgatgaagtgccacttgtagaac |
29920171 |
T |
|
| Q |
123 |
caaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatt |
207 |
Q |
| |
|
|||| ||||||||||||| |||||||||| || ||||||||||||||| ||||| || ||| | |||||| ||||||||||||| |
|
|
| T |
29920170 |
caactcttggtgtgttgggaggctgccttttttcttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaatt |
29920086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 29859292 - 29859494
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
||||||| || ||||| |||||||| || || |||||||| |||| || |||||||||||||| | ||||||||||| |||||||| ||||| ||| |
|
|
| T |
29859292 |
atattactgtcgaacaatttgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgccgcctgt |
29859391 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa |
217 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||||||||| |||||| |||| |||||| ||||||||| |||||||||||||||| | |||| |
|
|
| T |
29859392 |
gataccaactattggtgtgttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaa |
29859491 |
T |
|
| Q |
218 |
gat |
220 |
Q |
| |
|
||| |
|
|
| T |
29859492 |
gat |
29859494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 29874395 - 29874551
Alignment:
| Q |
65 |
gagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttgggggg-ctgcctttgtttttcttat |
163 |
Q |
| |
|
||||||||||||| || | |||||||||| ||||||||| |||||| ||||| |||||| | |||||||||||| | ||| ||||||||||||||| |
|
|
| T |
29874395 |
gagacatacaatcggtacttcttgcctcgtgattttgatgaggtgccacctgcacaaccaaatataggtgtgttggggcgactgtctttgtttttcttat |
29874494 |
T |
|
| Q |
164 |
tcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagat |
220 |
Q |
| |
|
| |||||| ||||||||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
29874495 |
tgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagat |
29874551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 29895302 - 29895500
Alignment:
| Q |
16 |
gaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatct |
115 |
Q |
| |
|
|||| ||| |||||| || |||||||| || || ||||| | || |||||||| ||||||||||| ||| |||||| ||||||||||| ||||| || |
|
|
| T |
29895302 |
gaatcttagagttgagcaatttgttattgtttcgcttgagctgggaacggagacttacaatcaatacctgctgcctctgggttttgatgaggtgccccct |
29895401 |
T |
|
| Q |
116 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttattctt---acaaagaaactgattttgttatatggcagatgaagaaatttggg |
211 |
Q |
| |
|
|| ||||||| ||| |||| ||||| ||||| ||||||||||||||||||| |||| |||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
29895402 |
acacaaccaacggttagtgtcttgggtggctgtctttgtttttcttattcttctgacaaggaaaacgaatttgttttatggcagatgaagaaatttggg |
29895500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 29445774 - 29445687
Alignment:
| Q |
132 |
gtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga |
219 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| |||||| ||||| |||||| ||||||||||||||||| |||| |||| |||||| |
|
|
| T |
29445774 |
gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaaga |
29445687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 29431230 - 29431039
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
|||||||| |||| || |||||||| | || |||||||| ||||| |||||||| ||| | || |||||||||||| ||||||||| ||||||| | |
|
|
| T |
29431230 |
atattacaattgagcagtttgttattctttcgcttgatttggggactgagacatataataagtacttgttgcctcgtgattttgatgaggtgccatttat |
29431131 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttgggg |
212 |
Q |
| |
|
| |||| ||| ||| |||||||| ||||||||||||||||||||| || || || ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
29431130 |
ggctccaatggttcatgttttggggggatgcctttgtttttcttattct---aaggacacctattttgttatatggcggatgatgaaatttgggg |
29431039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 18953105 - 18953046
Alignment:
| Q |
50 |
cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | |||| |||||||||||||||| |
|
|
| T |
18953105 |
cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg |
18953046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 18983152 - 18983093
Alignment:
| Q |
50 |
cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | |||| |||||||||||||||| |
|
|
| T |
18983152 |
cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg |
18983093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 18997798 - 18997739
Alignment:
| Q |
50 |
cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | |||| |||||||||||||||| |
|
|
| T |
18997798 |
cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg |
18997739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 22100462 - 22100523
Alignment:
| Q |
149 |
ctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttgg |
210 |
Q |
| |
|
|||||||||||| || || |||| ||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
22100462 |
ctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttgg |
22100523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 4366729 - 4366526
Alignment:
| Q |
16 |
gaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatct |
115 |
Q |
| |
|
||||||||| ||||| || |||||||| || || |||||| | || || ||||||||||||||||| || |||||||||||||||| ||||||||| || |
|
|
| T |
4366729 |
gaatattaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccacct |
4366630 |
T |
|
| Q |
116 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatg |
215 |
Q |
| |
|
| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
4366629 |
actgaaccaacagttggtgtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttg |
4366530 |
T |
|
| Q |
216 |
aaga |
219 |
Q |
| |
|
|||| |
|
|
| T |
4366529 |
aaga |
4366526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 39379275 - 39379092
Alignment:
| Q |
36 |
ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt |
135 |
Q |
| |
|
||||||| || || |||||||| ||||| || |||||||| || |||| ||||||| | ||||||||||| || || |||||||| |||| ||||||| |
|
|
| T |
39379275 |
ttgttattgtttcacttgatttggggactgaaacatacaaccagtatcggttgccttggggttttgatgaggttccgtctgcagagccaagttttggtgt |
39379176 |
T |
|
| Q |
136 |
gttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga |
219 |
Q |
| |
|
|||||| | ||| |||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
39379175 |
gttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaaga |
39379092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 21855615 - 21855413
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
||||||| ||||| || ||||| || || ||||||||||| | ||||||||||||||||||||| | |||||| ||||||||||||||| || | |
|
|
| T |
21855615 |
atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaa |
21855516 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa |
217 |
Q |
| |
|
||| ||||| ||||||| ||| ||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
21855515 |
agagccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaa |
21855416 |
T |
|
| Q |
218 |
gat |
220 |
Q |
| |
|
||| |
|
|
| T |
21855415 |
gat |
21855413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 17560997 - 17560803
Alignment:
| Q |
26 |
gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaa |
125 |
Q |
| |
|
|||||||| |||| ||| || || |||||||| |||| |||||||||||| | || | |||||||||| |||||| || |||||| | |||||||| |
|
|
| T |
17560997 |
gttgaacaatttggtattgtttcgcttgatttgaggactgagacatacaattagtacttattgcctcgtgattttgacgaggtgccaaccatagaaccaa |
17560898 |
T |
|
| Q |
126 |
ccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagat |
220 |
Q |
| |
|
| ||||||||||||||| ||| |||||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
17560897 |
cttttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaagat |
17560803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 4570780 - 4570967
Alignment:
| Q |
37 |
tgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtg |
136 |
Q |
| |
|
|||||| || ||||||||||| | ||||||||||||||||||||| || |||||||||| ||||||||||||| | | || || |||||||| |
|
|
| T |
4570780 |
tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaactagcctactattggtgtg |
4570879 |
T |
|
| Q |
137 |
t----tggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagat |
220 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
4570880 |
tgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagat |
4570967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 10218825 - 10219025
Alignment:
| Q |
26 |
gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc--atctgcagaac- |
122 |
Q |
| |
|
|||||||| | |||||| || ||||||||||| | ||||||||||||||||||||| || |||| ||||||||||| ||||| | || | | ||| |
|
|
| T |
10218825 |
gttgaacactctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtgacgcattcgtacaaca |
10218924 |
T |
|
| Q |
123 |
---caaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga |
219 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||| || |||| ||||||||||||||| ||||||| ||||||||||||||| |||||| |
|
|
| T |
10218925 |
caccaactattggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaaga |
10219024 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
|
|
| T |
10219025 |
t |
10219025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 4016974 - 4016802
Alignment:
| Q |
47 |
tctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc-atctgcagaaccaaccgttggtgtgttggggggc |
145 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| ||| | | || ||||| || |||||||||||||| |
|
|
| T |
4016974 |
tctcttgattt-gggacggagacatacaatcaatacatggtgcctcgtggttttgataaagggccgctttaca-tgccaactattagtgtgttggggggc |
4016877 |
T |
|
| Q |
146 |
tgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagat |
220 |
Q |
| |
|
|||||||||||||||||||| || | |||| |||| ||| |||||||||||||||||||| | ||||||| |
|
|
| T |
4016876 |
tgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagat |
4016802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 4015092 - 4014995
Alignment:
| Q |
129 |
ttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttg------ttatatggcagatgaagaaatttggggatgaagat |
220 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4015092 |
ttggtgtgctgggaggctgcctttgtttttcttatttgcacagggaaactcattttgatattgttatatggcagatgaagaaatttggggttgaagat |
4014995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 3557582 - 3557765
Alignment:
| Q |
36 |
ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt |
135 |
Q |
| |
|
||||||| || || |||||||| ||||| ||| ||||||| ||||||| ||||||||| ||||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
3557582 |
ttgttattgtttcacttgatttggggactgagtcatacaaccaatatcggttgcctcggggttttgatgagatgccgactgaggagccaaccgttggtgt |
3557681 |
T |
|
| Q |
136 |
gttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga |
219 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||| ||||| |||||| |||||||||| |||||| ||||||||| |||||| |
|
|
| T |
3557682 |
gttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaaga |
3557765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 3561187 - 3560989
Alignment:
| Q |
21 |
ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcaga |
120 |
Q |
| |
|
|||||||||| || |||||||| || || |||||| | || || |||||||||||||||||| |||||||||| ||||||||| | || || ||||||| |
|
|
| T |
3561187 |
ttacagttgagcagtttgttattgtttcgcttgatctgggaactgagacatacaatcaatatttgttgcctcggggttttgataaggtaccgcctgcaga |
3561088 |
T |
|
| Q |
121 |
accaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga |
219 |
Q |
| |
|
|| | ||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||| |||||||||| |||||| |
|
|
| T |
3561087 |
gcctaatcttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaaga |
3560989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 3565582 - 3565783
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
||||||| ||||| || ||||||| || || |||||||||||||| ||| ||||||| ||||||| |||||||| ||||||||||| || || ||| |
|
|
| T |
3565582 |
atattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctctgggttttgatgaggttccgactga |
3565681 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa |
217 |
Q |
| |
|
|| ||||| |||||||||||| ||| |||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
3565682 |
ggagccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaa |
3565781 |
T |
|
| Q |
218 |
ga |
219 |
Q |
| |
|
|| |
|
|
| T |
3565782 |
ga |
3565783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 1686517 - 1686325
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
||||||| |||||||| ||||||| || || ||| |||| ||||| ||||||||||||||||||| |||||||| ||||||| ||| ||||| | |
|
|
| T |
1686517 |
atattactgttgaacagattgttattgtttcacttaatttggggactgagacatacaatcaatatcggttgcctcagggttttgctgaggtgccgcttat |
1686418 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttgg |
210 |
Q |
| |
|
||| ||||| |||||||||||||||| |||||||||||||||||||||||| || || || || ||||||||||||||||| ||||||| |
|
|
| T |
1686417 |
agagccaactgttggtgtgttgggggactgcctttgtttttcttattcttataagaggaccaatcttattatatggcagatgaaggaatttgg |
1686325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 53774810 - 53774879
Alignment:
| Q |
150 |
tttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga |
219 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||||||| |||||| ||||||| | |||||| |
|
|
| T |
53774810 |
tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaaga |
53774879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 3625575 - 3625773
Alignment:
| Q |
21 |
ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcaga |
120 |
Q |
| |
|
|||| ||||| || |||||||| || || |||||||| ||||| |||||||||||||| ||| | |||||||||| |||||| | ||||| || ||| |
|
|
| T |
3625575 |
ttactgttgagcaatttgttattgtttcacttgatttggggactgagacatacaatcactattggctgcctcgtggatttgataaggtgcctcctataga |
3625674 |
T |
|
| Q |
121 |
accaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga |
219 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||| | ||| || || |||||||||| |||||||||||||||| |||||| |
|
|
| T |
3625675 |
accaaatgttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaaga |
3625773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 24331131 - 24330929
Alignment:
| Q |
18 |
atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc |
117 |
Q |
| |
|
||||||| ||||| || ||||| || || ||||||||||| | ||||||||||||||||||||| | |||||| ||||||||||||||| || | |
|
|
| T |
24331131 |
atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaa |
24331032 |
T |
|
| Q |
118 |
agaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa |
217 |
Q |
| |
|
||| ||||| ||||||| ||| ||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
24331031 |
agagccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaa |
24330932 |
T |
|
| Q |
218 |
gat |
220 |
Q |
| |
|
||| |
|
|
| T |
24330931 |
gat |
24330929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 13964 - 13773
Alignment:
| Q |
16 |
gaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatct |
115 |
Q |
| |
|
|||| ||| |||||| || |||||||| || || || ||||| | || |||||||||||||| || | ||||||||| |||| ||||| |||||||| |
|
|
| T |
13964 |
gaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactgagacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatct |
13865 |
T |
|
| Q |
116 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatt |
207 |
Q |
| |
|
|| |||| |||| ||| |||||||||| |||||||| ||| |||| |||||||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
13864 |
gctctgccaattgttgctgtcttggggggcttcctttgttgttcctatttttacaaagaaaccgattttcttatatggcagatgaaggaatt |
13773 |
T |
|
Back To:
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Target: scaffold0242; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 22799 - 22608
Alignment:
| Q |
16 |
gaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatct |
115 |
Q |
| |
|
|||| ||| |||||| || |||||||| || || || ||||| | || |||||||||||||| || | ||||||||| |||| ||||| |||||||| |
|
|
| T |
22799 |
gaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactgagacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatct |
22700 |
T |
|
| Q |
116 |
gcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatt |
207 |
Q |
| |
|
|| |||| |||| ||| |||||||||| |||||||| ||| |||| |||||||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
22699 |
gctctgccaattgttgctgtcttggggggcttcctttgttgttcctatttttacaaagaaaccgattttcttatatggcagatgaaggaatt |
22608 |
T |
|
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Target: scaffold0649 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 5404 - 5466
Alignment:
| Q |
146 |
tgcctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaattt |
208 |
Q |
| |
|
||||||||||||| | ||| || || |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
5404 |
tgcctttgtttttgtcattattctaaggaaaatgattttgttatatggcagatgaaaaaattt |
5466 |
T |
|
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Target: scaffold0867 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 4770 - 4709
Alignment:
| Q |
149 |
ctttgtttttcttattcttacaaagaaactgattttgttatatggcagatgaagaaatttgg |
210 |
Q |
| |
|
|||||||||||| || || |||| ||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
4770 |
ctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttgg |
4709 |
T |
|
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