View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10615_low_13 (Length: 228)
Name: NF10615_low_13
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 42797623 - 42797791
Alignment:
| Q |
1 |
tgcaaatagagaaagaaaatgtattccaacgaattggtaaaattgaacaaggatattgaactatcaaaaacttctttggaagataagatgtgtcatttag |
100 |
Q |
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| T |
42797623 |
tgcaaatagagaaagaaaatgtattccaacgaattggtagaattg-------------aactatcaaaaacttctttggaagataagatgtgtcatttag |
42797709 |
T |
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| Q |
101 |
aagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
182 |
Q |
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| T |
42797710 |
aagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
42797791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 42798152 - 42798204
Alignment:
| Q |
176 |
ataattattatcaactatatgctaaatcaagaaaccgtttgataatatgagtt |
228 |
Q |
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| T |
42798152 |
ataattattatcaactatatgctaaatcaagaaaccatttgataatatgagtt |
42798204 |
T |
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