View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10615_low_15 (Length: 208)
Name: NF10615_low_15
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_low_15 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 14878484 - 14878663
Alignment:
| Q |
15 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtg |
114 |
Q |
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| T |
14878484 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgattatatgtcactcttggtg |
14878583 |
T |
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| Q |
115 |
gatccctagcgttaagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaag |
194 |
Q |
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| T |
14878584 |
gatcccttgcattaagaagctctctgctccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaag |
14878663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 14759255 - 14759076
Alignment:
| Q |
15 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtg |
114 |
Q |
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| T |
14759255 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactattggtg |
14759156 |
T |
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| Q |
115 |
gatccctagcgttaagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaag |
194 |
Q |
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| T |
14759155 |
gatcccttgcattaagaagctctctgctccacactggtgagattgaaggtttactcatcccacgagatatttctcctaag |
14759076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 14786632 - 14786809
Alignment:
| Q |
17 |
gaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg-ggttctggatcgtattcacgatgagtacatgtcactcttggtgg |
115 |
Q |
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| T |
14786632 |
gaagaaagtgtgatgaaccatgtcgtctaagggaatgaccgttcctttgtt-tcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgg |
14786730 |
T |
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| Q |
116 |
atccctagcgttaagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaag |
194 |
Q |
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| T |
14786731 |
gttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaag |
14786809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 14873664 - 14873785
Alignment:
| Q |
57 |
gttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtggatccctagcgttaagaagctctctacaccacaccggtgaga |
156 |
Q |
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| T |
14873664 |
gttcctttggtgtcgggaacttgttcatattcatgatgagtgcatgttactcttggtggatcccttgcgtttagaagctctctatgccatactggtgaga |
14873763 |
T |
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| Q |
157 |
ttgaaggtttgctcatcccacg |
178 |
Q |
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| T |
14873764 |
ttgaaggtttgttcatcccacg |
14873785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 14767547 - 14767691
Alignment:
| Q |
21 |
aaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtggatccc |
120 |
Q |
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| T |
14767547 |
aaagagcgatgagccatgtcatctaagggaataattgttcctttggtgtcgggaacttgttcgtattcacgatgagtgcatgttactctcggtggatccc |
14767646 |
T |
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| Q |
121 |
tagcgttaagaagctctctacaccacaccggtgagattgaaggtt |
165 |
Q |
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| T |
14767647 |
ttgaatttagaagctccctatgccataccggtaagattgaaggtt |
14767691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 84558 - 84723
Alignment:
| Q |
28 |
ggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtggatccctagcgtt |
127 |
Q |
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| T |
84558 |
ggtggaccatgtcatctaaggaaaatgtgtttgctttgttgtcaggttctggttcgtattcacgatgagtacacgtcactcttggtgcatcccttgcgct |
84657 |
T |
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| Q |
128 |
aagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaa |
193 |
Q |
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| T |
84658 |
tagaatttctctgcaccacactggtgagattgaaggttttctcataccctgagatatttctgctaa |
84723 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 12000131 - 12000229
Alignment:
| Q |
17 |
gaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcc---tttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttgg |
112 |
Q |
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| T |
12000131 |
gaagaaagtgcggtgcatcatgtcatctaagagataaatggttcctaatttgttgtccggttctggttcgtatccgtgatgagtgtatgtcacttttgg |
12000229 |
T |
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