View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10615_low_2 (Length: 445)
Name: NF10615_low_2
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 51 - 432
Target Start/End: Complemental strand, 47544743 - 47544362
Alignment:
| Q |
51 |
tcaatgcaccgaggttgaatctcgatcatccgaacttaatctaagtagtcaccgatgttctaactgtgtaagcttaaggcatttcggtttgcagagagta |
150 |
Q |
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| T |
47544743 |
tcaatgcaccgaggttgaatctcgatcatccaaacttaatctaagtagtctccgatgttctgactgcgtaagcttaaggcattccggtttggagagagta |
47544644 |
T |
|
| Q |
151 |
ttgatccaagtagtaggtttctataacaagttttactagtaaagtagttaaatcaaggacttaccttcgcttttattgtttcaaaatcagcgtttaatat |
250 |
Q |
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| T |
47544643 |
ttgatccaagtagtaggtttctataacaagttttactagtaaagtagttaaatcaaggacttaccttcgcttttattgtttcaaaatcagcgtttaatat |
47544544 |
T |
|
| Q |
251 |
tctgttctcaacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagat |
350 |
Q |
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| T |
47544543 |
tctgttctcaacagcagaattgttatatttttggtccacatctgaaaaatgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagat |
47544444 |
T |
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| Q |
351 |
ttgaaagactaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaagcatgcatgcagacct |
432 |
Q |
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| T |
47544443 |
ttgaaagactaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaagcatgcatgcagacct |
47544362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 56 - 350
Target Start/End: Complemental strand, 47528628 - 47528335
Alignment:
| Q |
56 |
gcaccgaggttgaatctcgatcatccgaacttaatctaagtagtcaccgatgttctaactgtgtaagcttaaggcatttcggtttgcagagagtattgat |
155 |
Q |
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| T |
47528628 |
gcaccgaggttgaatctcaagcatccgatcttaatctaagtagtcaccaatgtgctgactgcgtaaactcaaggcatt-caaattgcagagaattttgat |
47528530 |
T |
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| Q |
156 |
ccaagtagtaggtttctataacaagttttactagtaaagtagttaaatcaaggacttaccttcgcttttattgtttcaaaatcagcgtttaatattctgt |
255 |
Q |
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| T |
47528529 |
ccaagtagtaggcttctataaccagttttactagtaaagtagttaaatcaaggacttaccttcgctcttaatgtttcaacatcagcttttaatattctgt |
47528430 |
T |
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| Q |
256 |
tctcaacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagat |
350 |
Q |
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| T |
47528429 |
tgtcaacagcagaattgttgaatttttgggtcacatctgttaaacgctttaacaatgaagaattttcacctcttaattcagaaacctaataagat |
47528335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 47537902 - 47537849
Alignment:
| Q |
347 |
agatttgaaagactaattaggatggatacagagatcagataagagaaggcataa |
400 |
Q |
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| T |
47537902 |
agatttaaaagactaattaagatggatacagagatcagagaatagaaggcataa |
47537849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 47538239 - 47538183
Alignment:
| Q |
287 |
cacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagaccta |
343 |
Q |
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| T |
47538239 |
cacatctgataaacgcgtcaacaacgaagaatgttcaccttttaatgtagagaccta |
47538183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 332
Target Start/End: Original strand, 36007348 - 36007469
Alignment:
| Q |
211 |
ttaccttcgcttttattgtttcaaaatcagcgtttaatattctgttctcaacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaa |
310 |
Q |
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||||||| ||| ||| ||||||| |||||| || | || |||||| ||||||||||||| | || ||||||| |||||| | || |||||| | ||| |
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| T |
36007348 |
ttacctttgctcttaacgtttcaacatcagctttcagtactctgttgtcaacagcagaatcagtgtacttttggttcacatcagtaagacgctttaccaa |
36007447 |
T |
|
| Q |
311 |
tgaagaattttcacctcttaat |
332 |
Q |
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| T |
36007448 |
ggtagaattttcacctcttaat |
36007469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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