View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10615_low_4 (Length: 413)

Name: NF10615_low_4
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10615_low_4
NF10615_low_4
[»] chr5 (6 HSPs)
chr5 (160-399)||(29730951-29731191)
chr5 (18-117)||(29731232-29731331)
chr5 (219-315)||(17110301-17110398)
chr5 (208-326)||(6764151-6764267)
chr5 (259-326)||(16482387-16482454)
chr5 (80-116)||(17110486-17110522)
[»] chr6 (11 HSPs)
chr6 (181-345)||(9513266-9513432)
chr6 (170-322)||(5474189-5474343)
chr6 (170-315)||(720355-720501)
chr6 (170-327)||(24316690-24316847)
chr6 (216-322)||(11121501-11121608)
chr6 (216-326)||(15559512-15559623)
chr6 (80-117)||(720538-720575)
chr6 (80-117)||(9513469-9513506)
chr6 (77-113)||(4986025-4986061)
chr6 (61-117)||(11121676-11121732)
chr6 (61-117)||(31737887-31737943)
[»] chr8 (8 HSPs)
chr8 (182-326)||(8776930-8777075)
chr8 (178-326)||(3941551-3941700)
chr8 (170-326)||(11958735-11958893)
chr8 (243-326)||(6420782-6420865)
chr8 (182-315)||(17648665-17648797)
chr8 (216-316)||(1805548-1805649)
chr8 (231-326)||(3730540-3730635)
chr8 (259-326)||(18381481-18381548)
[»] chr1 (19 HSPs)
chr1 (170-303)||(9089915-9090049)
chr1 (182-326)||(1609284-1609427)
chr1 (170-314)||(1345382-1345528)
chr1 (178-317)||(18525630-18525768)
chr1 (170-313)||(15853185-15853330)
chr1 (216-311)||(5965195-5965291)
chr1 (219-326)||(14500942-14501050)
chr1 (170-290)||(32830032-32830154)
chr1 (216-326)||(8314744-8314851)
chr1 (253-325)||(12437608-12437680)
chr1 (243-326)||(45541339-45541422)
chr1 (243-326)||(2843830-2843913)
chr1 (259-326)||(32519875-32519942)
chr1 (283-326)||(38981179-38981222)
chr1 (243-326)||(49008045-49008128)
chr1 (283-313)||(32829308-32829338)
chr1 (80-117)||(18525823-18525860)
chr1 (182-241)||(36085644-36085702)
chr1 (80-112)||(9090112-9090144)
[»] chr2 (8 HSPs)
chr2 (170-325)||(9893970-9894126)
chr2 (182-240)||(30750430-30750489)
chr2 (193-290)||(31078875-31078973)
chr2 (181-316)||(30750637-30750771)
chr2 (167-314)||(27544872-27545020)
chr2 (181-326)||(9160431-9160576)
chr2 (283-326)||(4648068-4648111)
chr2 (216-316)||(12528287-12528388)
[»] chr4 (7 HSPs)
chr4 (170-315)||(34851399-34851546)
chr4 (178-324)||(22310453-22310599)
chr4 (167-315)||(1206619-1206769)
chr4 (216-326)||(29688800-29688911)
chr4 (208-324)||(19327112-19327230)
chr4 (170-266)||(34446527-34446625)
chr4 (61-106)||(18885216-18885261)
[»] chr3 (7 HSPs)
chr3 (170-327)||(587131-587288)
chr3 (170-315)||(46028385-46028532)
chr3 (178-306)||(637210-637340)
chr3 (22-117)||(9152449-9152546)
chr3 (254-324)||(28311653-28311723)
chr3 (243-326)||(22402280-22402363)
chr3 (179-228)||(9152345-9152394)
[»] scaffold0014 (2 HSPs)
scaffold0014 (170-326)||(20166-20324)
scaffold0014 (60-117)||(15846-15903)
[»] chr7 (9 HSPs)
chr7 (208-326)||(37573337-37573457)
chr7 (216-314)||(5287578-5287675)
chr7 (231-326)||(7792831-7792927)
chr7 (61-117)||(15456163-15456219)
chr7 (208-345)||(21292380-21292519)
chr7 (243-326)||(21949871-21949954)
chr7 (259-326)||(34638616-34638683)
chr7 (259-326)||(42053516-42053583)
chr7 (178-227)||(15456253-15456303)
[»] scaffold0204 (1 HSPs)
scaffold0204 (216-269)||(13796-13850)
[»] scaffold0009 (1 HSPs)
scaffold0009 (259-326)||(194778-194845)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 160 - 399
Target Start/End: Complemental strand, 29731191 - 29730951
Alignment:
Q  160 gatctacaaatggatccgaccctaaacaattctaacaattaagcatgagtctaaagttggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtacc 258  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  29731191 gatccacaaatggatccaaccctaaacaattctaacaattaagcatgagtctaaagttggcgaatgaaacgatcgtcaacacgaaatcggatcacgtacc 29731092  T
Q  259 atcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaattaaccaaatgacttggataacctgaaacaacg 358  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |    
T  29731091 atcaactccctgaaacaaggacatcaagcattgacgactctttcgagtccatagagtcccatgtcaatcaacaaaatgacttggataacctgaaacaatg 29730992  T
Q  359 acatcaagtattgacgatacgattcatggtccaaaatcccc 399  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  29730991 acatcaagcattgacgatacgattcatggtccaaaaccccc 29730951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 29731331 - 29731232
Alignment:
Q  18 actcttgttgtcaattgctcataaatattattnnnnnnnggggaaattacataagaacgggagggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    |||||||| | |||||||||||||||||||||        |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  29731331 actcttgtggccaattgctcataaatattattaaaaaaaagggaaattacataagaactggagggacataaaacctgactcagtcaacaaccctaacggg 29731232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 17110398 - 17110301
Alignment:
Q  219 gcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagt 315  Q
    ||||||||| |||||||||||||||| || ||| |||||||||||||| |||  ||||| ||||||||||||||| ||||||||||||||| ||||||    
T  17110398 gcgaatgaatcgatcgtcaacacgaaatcggatcacgtaccatcaacttcctgcaacaaagacatcaagcattgacgactctttcgagtccctacagt 17110301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 6764151 - 6764267
Alignment:
Q  208 gtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgag 305  Q
    |||||||||| |||||||||| |||| ||||||||||| |  ||| ||||  ||||||||||||  |||   | || |||||||||| ||||||||||||    
T  6764151 gtctaaagtttggcgaatgaatcgattgtcaacacgaaattggatcacgtgtcatcaactccctgcaac---ggcaacaagcattgacgactctttcgag 6764247  T
Q  306 tccatacagtcccatgtcaat 326  Q
    |||||||||| ||||||||||    
T  6764248 tccatacagt-ccatgtcaat 6764267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 16482387 - 16482454
Alignment:
Q  259 atcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||||||  ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  16482387 atcaactccctgcaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 16482454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 17110522 - 17110486
Alignment:
Q  80 gggacataaaacatgactcagtcaacaaccctaacgg 116  Q
    |||||||||||| |||| |||||||||||||||||||    
T  17110522 gggacataaaacctgacccagtcaacaaccctaacgg 17110486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 9513432 - 9513266
Alignment:
Q  181 ctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccctaaaacaag-g 278  Q
    |||||||||| ||||||||||||| | |||||||||| |||||||||| ||||||||||||| |||| ||| ||||||||||||||||||  |||||  |    
T  9513432 ctaaacaattataacaattaagcacgggtctaaagtttggcgaatgaatcgatcgtcaacactaatcggatcacgtaccatcaactccctgcaacaacag 9513333  T
Q  279 acatcaagcattgatgactctttcgagtccatacagtcccatgtcaattaaccaaatgacttggata 345  Q
    ||| ||||||||| ||||||||||||||||| |||||||||||||||| ||| | |||||| |||||    
T  9513332 acagcaagcattggtgactctttcgagtccacacagtcccatgtcaatcaacaagatgactgggata 9513266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 322
Target Start/End: Complemental strand, 5474343 - 5474189
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| ||||||||||||| ||||||||||||    |||||||||| |||||||||| ||||||||||||| || || ||| ||||||||||||||||    
T  5474343 tggatccaaccctaaacaattataacaattaagcgcatgtctaaagtttggcgaatgaatcgatcgtcaacacaaaatcggatcacgtaccatcaactcc 5474244  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgt 322  Q
    ||  ||||| ||||  |||||||||||||||||||||||||||||||| ||||||    
T  5474243 ctggaacaacgacaataagcattgatgactctttcgagtccatacagttccatgt 5474189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 315
Target Start/End: Complemental strand, 720501 - 720355
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| |||||||| | ||||||||||| |||  | |||||||||| |||||||||| |||||||||||||||| || ||| |||||| |||||||||    
T  720501 tggatccaaccctaaagatttctaacaattgagctcgggtctaaagtttggcgaatgaaccgatcgtcaacacgaaatcggatcacgtactatcaactcc 720402  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccatacagt 315  Q
    ||  ||||| |||| |||||||||| ||||| ||||||||||||||||    
T  720401 ctgcaacaaagacaacaagcattgacgactc-ttcgagtccatacagt 720355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 170 - 327
Target Start/End: Complemental strand, 24316847 - 24316690
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagttgg-cgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccc 268  Q
    ||||||| ||||||||||||||||||| |||| |  | ||||| |||| | |||||||| || ||||||||||||||| ||| |||||||| ||||||||    
T  24316847 tggatccaaccctaaacaattctaaca-ttaaacgcgggtctatagtttgtcgaatgaaccgctcgtcaacacgaatcggatcacgtaccagcaactccc 24316749  T
Q  269 taaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaatt 327  Q
    |  ||||| |||| ||||||||||  |||||||| |||||||| |||||||||| ||||    
T  24316748 tgcaacaacgacaacaagcattgacaactctttcaagtccataaagtcccatgtaaatt 24316690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 11121608 - 11121501
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    |||| ||||||| |||||||||||||||| || ||| | ||| ||| |||||| |  ||||| |||| |||||||| |||||| |||||||||||||||     
T  11121608 ttggtgaatgaatcgatcgtcaacacgaaatcggatcaagtatcattaactccttgcaacaatgacaacaagcattaatgactttttcgagtccatacaa 11121509  T
Q  315 tcccatgt 322  Q
    || |||||    
T  11121508 tctcatgt 11121501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 15559512 - 15559623
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacga-atcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    |||| ||||||| ||||||||||||| | ||   || ||||| |||||||| | |  ||||| |||| |||||||| | |||||||||||||||| ||||    
T  15559512 ttggtgaatgaatcgatcgtcaacacaacattgaatcacgtatcatcaacttcatgcaacaacgacaacaagcattaacgactctttcgagtccacacag 15559611  T
Q  315 tcccatgtcaat 326  Q
    ||||||||||||    
T  15559612 tcccatgtcaat 15559623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 720575 - 720538
Alignment:
Q  80 gggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  720575 gggaaataaaacatgacccagtcaacaaccctaacggg 720538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 9513506 - 9513469
Alignment:
Q  80 gggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  9513506 gggacataaaacctgacccagtcaacaaccctaacggg 9513469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 4986061 - 4986025
Alignment:
Q  77 ggagggacataaaacatgactcagtcaacaaccctaa 113  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  4986061 ggagggacataaaacctgactcggtcaacaaccctaa 4986025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 11121732 - 11121676
Alignment:
Q  61 aaattacataagaacgggagggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    ||||||||||| ||| || ||||||||| |  |||| ||||||||||||||||||||    
T  11121732 aaattacataaaaactggggggacataacaattgacccagtcaacaaccctaacggg 11121676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 31737887 - 31737943
Alignment:
Q  61 aaattacataagaacgggagggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    ||||||||||| ||  || |||||||||||| |||| ||||||||||||||| ||||    
T  31737887 aaattacataaaaattggggggacataaaacctgacccagtcaacaaccctagcggg 31737943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 182 - 326
Target Start/End: Original strand, 8776930 - 8777075
Alignment:
Q  182 taaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccctaaaacaaggac 280  Q
    ||||||| ||||||||||||| | |||| ||||||| |||||||||| |||||||||||| ||||| ||| ||||||||||||| ||||  ||||| |||    
T  8776930 taaacaaatctaacaattaagtacgagtataaagtttggcgaatgaatcgatcgtcaacatgaatcggatcacgtaccatcaaccccctgcaacaacgac 8777029  T
Q  281 atcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  8777030 atcaagcattgatgactctttcgagcccatacagtcctatgtcaat 8777075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 3941551 - 3941700
Alignment:
Q  178 accctaaacaattctaacaattaagcatgagtctaaag-ttggcgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccctaaaacaa 276  Q
    |||||||||||||||||||||||| |  | |||||||| |||||||||||| ||||||||||||| |||| ||| | ||| |||||||| |||  |||||    
T  3941551 accctaaacaattctaacaattaaacgcgggtctaaagcttggcgaatgaatcgatcgtcaacacaaatcggatcatgtatcatcaacttcctgcaacaa 3941650  T
Q  277 ggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
     |||| |||||||||| ||||||||||||||||||||||| |||| ||||    
T  3941651 cgacagcaagcattgacgactctttcgagtccatacagtctcatgacaat 3941700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 326
Target Start/End: Complemental strand, 11958893 - 11958735
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| ||||||||||| ||||||||||||||  | |||||||||| || |||||||  |||| ||||||| || ||  || | ||||||||||||||    
T  11958893 tggatccaaccctaaacaaatctaacaattaagcgcgggtctaaagtttggtgaatgaatagatcatcaacactaaatcgaatcatgtaccatcaactcc 11958794  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    ||  ||||| | || |||||||| | |||||||||||||||| ||||||| ||||||||    
T  11958793 ctgcaacaacggcaacaagcattaacgactctttcgagtccacacagtccaatgtcaat 11958735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 6420782 - 6420865
Alignment:
Q  243 aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||| |||| | |||||||||||| ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  6420782 aatcagatcacgtgctatcaactccctacaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 6420865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 17648665 - 17648797
Alignment:
Q  182 taaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccctaaaacaaggac 280  Q
    |||||| ||||||||| |||||  | |||||||||| |||||||||| ||||||||||||| |||  ||| || |||||||||||  ||  ||||| |||    
T  17648665 taaacatttctaacaactaagctcgggtctaaagtttggcgaatgaaccgatcgtcaacacaaattggatcacataccatcaact--ctgcaacaaagac 17648762  T
Q  281 atcaagcattgatgactctttcgagtccatacagt 315  Q
    | |||  ||||| ||||||||||||| ||||||||    
T  17648763 aacaaagattgacgactctttcgagttcatacagt 17648797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 1805649 - 1805548
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    ||||| |||||| |||||||||||| ||| | |||| |||| |||| |||||| |  ||||| |||||||| |||| | |||||||||||||||| ||||    
T  1805649 ttggcaaatgaatcgatcgtcaacatgaaattagatcacgtgccattaactccatgcaacaacgacatcaaacattaacgactctttcgagtccacacag 1805550  T
Q  315 tc 316  Q
    ||    
T  1805549 tc 1805548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 3730635 - 3730540
Alignment:
Q  231 atcgtcaacacgaatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    ||||| |||||||||| |||  |||||||||||||||||  |||||  ||| || | ||| | ||||||||  |||||||| ||||||||||||||    
T  3730635 atcgttaacacgaatcggatcgcgtaccatcaactccctgcaacaaccacaacacgaattaacgactctttttagtccatatagtcccatgtcaat 3730540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 18381548 - 18381481
Alignment:
Q  259 atcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||||||  ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  18381548 atcaactccctgcaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 18381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 170 - 303
Target Start/End: Complemental strand, 9090049 - 9089915
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagttggcgaatgaaacgatcgtcaacacg-aatcagatgacgtaccatcaactccc 268  Q
    ||||||| ||||||||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||| | |||| ||| |||||||||||| || |    
T  9090049 tggatccaaccctaaacaattttaacaattaagctcgagtctaaagttggtgaatgaaacgatcgtcaacatgaaatcggatcacgtaccatcaaatctc 9089950  T
Q  269 taaaacaaggacatcaagcattgatgactctttcg 303  Q
    |||||||| |||||||||||| |||||||||||||    
T  9089949 taaaacaacgacatcaagcatcgatgactctttcg 9089915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 326
Target Start/End: Complemental strand, 1609427 - 1609284
Alignment:
Q  182 taaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaagga 279  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| ||| || ||| |||| |||||||||||||| |||   |     
T  1609427 taaacaattctaacaattaagcgtgagtctaaagtttggcgaatgaatcgatcgtcaacaagaaatcggatcacgtgccatcaactccctacaac---gg 1609331  T
Q  280 catcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    || |||||||||| ||||||||||||| |||||||||||||||||||    
T  1609330 cagcaagcattgacgactctttcgagttcatacagtcccatgtcaat 1609284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 170 - 314
Target Start/End: Original strand, 1345382 - 1345528
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaa-gttggcgaatgaaacgatcgtcaacacg-aatcagatgacgtaccatcaactcc 267  Q
    ||||||| |||||||||||||  |||||||||    | |||||||  |||||||||||| |||||||||||||| |||| ||| |||||||||||||||     
T  1345382 tggatccaaccctaaacaatttcaacaattaaatgcgggtctaaactttggcgaatgaatcgatcgtcaacacgaaatcggatcacgtaccatcaactct 1345481  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
     || ||||| ||||||||||||| | |||||||||||||||||||||    
T  1345482 ttacaacaacgacatcaagcattaacgactctttcgagtccatacag 1345528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 317
Target Start/End: Complemental strand, 18525768 - 18525630
Alignment:
Q  178 accctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaaca 275  Q
    ||||||||||| ||||||||||||||    |||||||||| ||||||| || |||||||||||| ||| |||||| |||| |||||||||||||| |||     
T  18525768 accctaaacaaatctaacaattaagcgcaggtctaaagtttggcgaataaatcgatcgtcaacatgaaatcagatcacgtgccatcaactccctacaac- 18525670  T
Q  276 aggacatcaagcattgatgactctttcgagtccatacagtcc 317  Q
      | || ||| |||||||||||||||||||||||||||||||    
T  18525669 --ggcaacaaacattgatgactctttcgagtccatacagtcc 18525630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 170 - 313
Target Start/End: Original strand, 15853185 - 15853330
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| |||||||| | ||||||||||| |||  | ||||||| || |||||||||| |||||||||||||||| |  ||| ||||||||||||||||    
T  15853185 tggatccaaccctaaagatttctaacaattgagctcgggtctaaaatttggcgaatgaaccgatcgtcaacacgaaattggatcacgtaccatcaactcc 15853284  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccataca 313  Q
    ||  || || |||| |||||||||| || |||||||||||||||||    
T  15853285 ctgcaataaagacaacaagcattgacgaatctttcgagtccataca 15853330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 5965291 - 5965195
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccata 311  Q
    |||||||||||| |||||||||||||||| || ||| ||||||||||||||||||| ||||| || | ||||||| || |||||||| |||||||||    
T  5965291 ttggcgaatgaaccgatcgtcaacacgaaatcggatcacgtaccatcaactccctacaacaaagaaaacaagcatcgacgactcttttgagtccata 5965195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 14501050 - 14500942
Alignment:
Q  219 gcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcc 317  Q
    ||||||||| |||||||||||||||| |||||| |||||| |||||||||||| ||||| || |  ||||||| | ||||||||||| |||| ||| |||    
T  14501050 gcgaatgaatcgatcgtcaacacgaaatcagatcacgtacaatcaactccctacaacaacgaaaagaagcattaacgactctttcgaatccacacaatcc 14500951  T
Q  318 catgtcaat 326  Q
    |||||||||    
T  14500950 catgtcaat 14500942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 290
Target Start/End: Complemental strand, 32830154 - 32830032
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagttgg-cgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| ||| |||| | ||||||||||| |||  | |||||||||| | |||||||| |||||||||||||||| || ||| ||||||||||||||||    
T  32830154 tggatccaaccttaaagatttctaacaattgagctcgggtctaaagtttgacgaatgaaccgatcgtcaacacgaaatcggatcacgtaccatcaactcc 32830055  T
Q  268 ctaaaacaaggacatcaagcatt 290  Q
    ||  ||||| |||| ||||||||    
T  32830054 ctgcaacaaagacagcaagcatt 32830032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 8314744 - 8314851
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||  |  |||  || |||||||| | |||||||||||||||| ||||    
T  8314744 ttggcaaatgaaacgatcgtcaacacgaattcggatcacgtaccatcaactccctgca--aag--caacaagcattaacgactctttcgagtccacacag 8314839  T
Q  315 tcccatgtcaat 326  Q
    |||||| |||||    
T  8314840 tcccatttcaat 8314851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 12437680 - 12437608
Alignment:
Q  253 cgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaa 325  Q
    |||||||||||||||||  ||||| ||||||||  ||| | ||||||||| ||||||||||||| ||||||||    
T  12437680 cgtaccatcaactccctgcaacaacgacatcaaaaattaacgactctttcaagtccatacagtctcatgtcaa 12437608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 45541339 - 45541422
Alignment:
Q  243 aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||| |||| |||||||||||||  ||||| | || |||||||| | ||||||||| |||||| |||||| |||||||||    
T  45541339 aatcagatcacgtgccatcaactccctgcaacaacggcaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 45541422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 2843830 - 2843913
Alignment:
Q  243 aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||| ||| |||| ||||||||||| |  ||||| | || |||||| | ||||||||||| ||||||||||||| |||||||||    
T  2843830 aatcggatcacgtgccatcaactccatgcaacaacggcaacaagcaataatgactctttcaagtccatacagtctcatgtcaat 2843913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 32519942 - 32519875
Alignment:
Q  259 atcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||||||  ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  32519942 atcaactccctgcaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 32519875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 38981222 - 38981179
Alignment:
Q  283 caagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||    
T  38981222 caagcattaatgactctttcaagtccatacagtctcatgtcaat 38981179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 49008045 - 49008128
Alignment:
Q  243 aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||| ||| |||| ||||||||||| |  ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  49008045 aatcggatcacgtgccatcaactccttgcaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 49008128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 32829338 - 32829308
Alignment:
Q  283 caagcattgatgactctttcgagtccataca 313  Q
    |||||||||||||||||||||||||||||||    
T  32829338 caagcattgatgactctttcgagtccataca 32829308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 18525860 - 18525823
Alignment:
Q  80 gggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  18525860 gggacataaaacctgacccagtcaacaaccctaacggg 18525823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 36085644 - 36085702
Alignment:
Q  182 taaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacac 241  Q
    |||||||||||||||| |||||  | |||||||||| |||||||||| |||||||||||||    
T  36085644 taaacaattctaacaaataagc--gggtctaaagtttggcgaatgaatcgatcgtcaacac 36085702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 9090144 - 9090112
Alignment:
Q  80 gggacataaaacatgactcagtcaacaacccta 112  Q
    |||||||||||| ||||||||||||||||||||    
T  9090144 gggacataaaacctgactcagtcaacaacccta 9090112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 325
Target Start/End: Complemental strand, 9894126 - 9893970
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagttgg-cgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccc 268  Q
    ||||||| ||||||||||||||||||||||||||  | | |||||||| | |||||||| |||||||||||||||||||||| |||| ||||||||||||    
T  9894126 tggatccaaccctaaacaattctaacaattaagcgcggggctaaagtttgtcgaatgaatcgatcgtcaacacgaatcagatcacgtgccatcaactccc 9894027  T
Q  269 taaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaa 325  Q
    |  ||||| |||| ||  |||||||| |||||||||||||| |||||| ||||||||    
T  9894026 tgcaacaatgacaacactcattgatgcctctttcgagtccaaacagtctcatgtcaa 9893970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 30750430 - 30750489
Alignment:
Q  182 taaacaattctaacaattaagcatgagtctaaag-ttggcgaatgaaacgatcgtcaaca 240  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  30750430 taaacaattctaacaattaagcgtgagtctaaagtttggcgaatgaatcgatcgtcaaca 30750489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 31078875 - 31078973
Alignment:
Q  193 aacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccctaaaacaaggacatcaagcatt 290  Q
    |||||||||||  | |||||||||| ||||||| ||  ||||||||||||||||||||| | ||||||||||||||||  ||||| |||| ||||||||    
T  31078875 aacaattaagcgcgggtctaaagtttggcgaataaattgatcgtcaacacgaatcagatcatgtaccatcaactccctgcaacaacgacaacaagcatt 31078973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 30750637 - 30750771
Alignment:
Q  181 ctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacg-aatcagatgacgtaccatcaactccctaaaacaagg 278  Q
    |||||||| ||||||||||||||  | |||| ||||| |||||||||| |||||||||||||| |||| ||| || |  ||||||||||||    ||| |    
T  30750637 ctaaacaaatctaacaattaagcgcgggtctgaagtttggcgaatgaatcgatcgtcaacacgaaatcggatcacatgtcatcaactccct---gcaacg 30750733  T
Q  279 acatcaagcattgatgactctttcgagtccatacagtc 316  Q
     || |||||||||| |||||||||||||||||| ||||    
T  30750734 gcagcaagcattgacgactctttcgagtccatatagtc 30750771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 314
Target Start/End: Original strand, 27544872 - 27545020
Alignment:
Q  167 aaatggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaact 265  Q
    |||||||| | |||||||||| || ||||||||||||    || |||| || ||| |||||| ||| ||||||||||||   ||| || |||||||||||    
T  27544872 aaatggattcaaccctaaacatttgtaacaattaagctcaggtttaaaatttggcaaatgaaccgaccgtcaacacgaaatggatcacataccatcaact 27544971  T
Q  266 ccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    ||||  |||||  ||| ||||||  || |||||||||||||||||||||    
T  27544972 ccctgcaacaaaaacagcaagcaacgacgactctttcgagtccatacag 27545020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 326
Target Start/End: Complemental strand, 9160576 - 9160431
Alignment:
Q  181 ctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcag-atgacgtaccatcaactccctaaaacaagg 278  Q
    |||||||| ||||||||||||||    |||||||||| |||||| |||  ||| ||||||||||| | | || |||| ||||||||  |||   |||| |    
T  9160576 ctaaacaaatctaacaattaagcgcatgtctaaagtttggcgaacgaattgattgtcaacacgaaaccggatcacgtgccatcaac--cctcctacaacg 9160479  T
Q  279 acatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
     || |||||||| | ||||||||||||||||||||||| |||||||||    
T  9160478 gcaacaagcattaaggactctttcgagtccatacagtctcatgtcaat 9160431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 4648111 - 4648068
Alignment:
Q  283 caagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||    
T  4648111 caagcattaatgactctttcaagtccatacagtctcatgtcaat 4648068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 12528388 - 12528287
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    ||||| ||||||||||| |||||||| || ||  || || |||||||||||||||| |||||  ||| || || || | |||||||||||||||| ||||    
T  12528388 ttggcaaatgaaacgatggtcaacacaaaatcgtatcacataccatcaactccctacaacaacaacaacatgcgttaacgactctttcgagtccacacag 12528289  T
Q  315 tc 316  Q
    ||    
T  12528288 tc 12528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 34851399 - 34851546
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| |||||||| | ||||||||||| |||  |  ||||||||| |||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  34851399 tggatccaaccctaaagatttctaacaattgagctcggatctaaagtttggcgaatgaaccgatcgtcaacacgaaatcagatcacgtaccatcaactcc 34851498  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccatacagt 315  Q
    ||  ||||| |||| |||||||||||||||||||| ||||||||||||    
T  34851499 ctgcaacaaagacaacaagcattgatgactctttcaagtccatacagt 34851546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 22310453 - 22310599
Alignment:
Q  178 accctaaacaattctaacaattaagcatgagtctaaag-ttggcgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccctaaaacaa 276  Q
    |||||||| |||||||||||||||||  | |||||||| || ||||||||| | ||||| |||| ||||| ||| ||||||||||||||| |   ||||     
T  22310453 accctaaaaaattctaacaattaagcgcgggtctaaagtttagcgaatgaatcaatcgttaacatgaatcggatcacgtaccatcaactctc-gcaacag 22310551  T
Q  277 ggacatcaagcattgatgactctttcgagtccatacagtcccatgtca 324  Q
     ||||||||||||||   ||||||||||||||||| ||||||||||||    
T  22310552 cgacatcaagcattggcaactctttcgagtccatatagtcccatgtca 22310599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 315
Target Start/End: Complemental strand, 1206769 - 1206619
Alignment:
Q  167 aaatggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcag-atgacgtaccatcaac 264  Q
    |||||||| | |||||||||| || ||||||||||||    || |||| || |||||||||| ||||||| |||||||| | | || |||||||||||||    
T  1206769 aaatggattcaaccctaaacatttgtaacaattaagctcaggtttaaaatttggcgaatgaaccgatcgttaacacgaaaccggatcacgtaccatcaac 1206670  T
Q  265 tccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagt 315  Q
    |||||  ||||| |||| ||||||| ||  |||||||||||||||||||||    
T  1206669 tccctgcaacaaagacaacaagcatcgacaactctttcgagtccatacagt 1206619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 29688800 - 29688911
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacgaatcagatg-acgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    |||| ||||||||||||||||||||||||   |||  ||||||||||||||||||  ||||| |||| ||| |||| | |||||||||  || |||| ||    
T  29688800 ttggtgaatgaaacgatcgtcaacacgaaatcgattcacgtaccatcaactccctgcaacaaagacaacaaacattaacgactctttctggttcatatag 29688899  T
Q  315 tcccatgtcaat 326  Q
    | ||||||||||    
T  29688900 ttccatgtcaat 29688911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 19327230 - 19327112
Alignment:
Q  208 gtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcagatg-acgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgag 305  Q
    |||||||||| || ||||||| ||||||||||||||||   |||  ||||| |||||||||||||  |||| |||| |||||| | | ||||||||| ||    
T  19327230 gtctaaagtttggtgaatgaatcgatcgtcaacacgaaaacgattcacgtatcatcaactccctactacaatgacaacaagcaataacgactctttcaag 19327131  T
Q  306 tccatacagtcccatgtca 324  Q
    ||||||| | |||||||||    
T  19327130 tccatacggacccatgtca 19327112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 34446527 - 34446625
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaag-ttggcgaatgaaacgatcgtcaacac-gaatcagatgacgtaccatcaactc 266  Q
    ||||||| ||||||||||| |||||||||| ||| || |||||||| ||||| ||||||  ||||||| ||||  |||| ||| |||| ||||||||||    
T  34446527 tggatccaaccctaaacaaatctaacaatttagcgtgggtctaaagtttggcaaatgaattgatcgtcgacacaaaatcggatcacgtgccatcaactc 34446625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 18885261 - 18885216
Alignment:
Q  61 aaattacataagaacgggagggacataaaacatgactcagtcaaca 106  Q
    ||||||||||| ||| || |||||||||||| ||||||||||||||    
T  18885261 aaattacataaaaactggggggacataaaacctgactcagtcaaca 18885216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 327
Target Start/End: Original strand, 587131 - 587288
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagttgg-cgaatgaaacgatcgtcaacacgaatcagatgacgtaccatcaactccc 268  Q
    ||||||| ||||||||||||||||||| ||||||  | |||||||||| | |||||||| || ||||||||||||||| ||| |||||||| ||||||||    
T  587131 tggatccaaccctaaacaattctaaca-ttaagcgcgggtctaaagtttgtcgaatgaaccgctcgtcaacacgaatcggatcacgtaccagcaactccc 587229  T
Q  269 taaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaatt 327  Q
    |  ||||| |||| ||||||||||  |||||||| |||||||| |||||||||||||||    
T  587230 tgcaacaacgacaacaagcattgacaactctttcaagtccatatagtcccatgtcaatt 587288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 170 - 315
Target Start/End: Complemental strand, 46028532 - 46028385
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| |||||||| | ||||||||||| |||  | |||||||||| |||||||||| ||||||||||||| || || ||| ||||||||||||||||    
T  46028532 tggatccaaccctaaagatttctaacaattgagctcgggtctaaagtttggcgaatgaaccgatcgtcaacacaaaatcggatcacgtaccatcaactcc 46028433  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccatacagt 315  Q
     |  ||||| |||| |||||||||| ||||||||||||||||||||||    
T  46028432 ttgcaacaaagacaacaagcattgacgactctttcgagtccatacagt 46028385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 637210 - 637340
Alignment:
Q  178 accctaaacaattctaacaattaagcatgagtctaaag-ttggcgaatgaaacgatcgtcaacacg-aatcagatgacgtaccatcaactccctaaaaca 275  Q
    |||||||||| || ||||||||||||| | |||||||| ||| ||| |||| |||||||||||||| ||||  || || | |||||||||||||  ||||    
T  637210 accctaaacagttataacaattaagcacgggtctaaagtttgacgagtgaatcgatcgtcaacacgaaatcgaatcacttgccatcaactccctgcaaca 637309  T
Q  276 aggacatcaagcattgatgactctttcgagt 306  Q
    |  ||| |||||||||| |||| ||||||||    
T  637310 actacagcaagcattgacgactatttcgagt 637340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 9152546 - 9152449
Alignment:
Q  22 ttgttgtcaattgctcataaatattattnnnnnnnggggaaa--ttacataagaacgggagggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    ||||||||||||||||||| ||||||||       | |||||  |||||||| ||| | ||||||||||||| ||||||||| |||||||||||||||    
T  9152546 ttgttgtcaattgctcatatatattattaaaaaaggaggaaaaattacataaaaactgaagggacataaaacctgactcagttaacaaccctaacggg 9152449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 28311723 - 28311653
Alignment:
Q  254 gtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtca 324  Q
    ||||||||||||||||  ||| | | || |||||| | | |||||||||||||||||||||||||||||||    
T  28311723 gtaccatcaactccctgcaactatgtcagcaagcaataacgactctttcgagtccatacagtcccatgtca 28311653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 22402280 - 22402363
Alignment:
Q  243 aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||| |||| |||||||||||||  ||||| | || |||||||| | ||||||||| ||| || |||||| |||||||||    
T  22402280 aatcagatcacgtgccatcaactccctgcaacaacggcaacaagcattaacgactctttcaagttcacacagtctcatgtcaat 22402363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 9152394 - 9152345
Alignment:
Q  179 ccctaaacaattctaacaattaagcatgagtctaaagttggcgaatgaaa 228  Q
    ||||||| |||||||||||| ||||| | |||||||||||| ||||||||    
T  9152394 ccctaaaaaattctaacaataaagcacgggtctaaagttggggaatgaaa 9152345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 326
Target Start/End: Original strand, 20166 - 20324
Alignment:
Q  170 tggatccgaccctaaacaattctaacaattaagcatgagtctaaagtt-ggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactcc 267  Q
    ||||||| ||||||||||| ||||||| ||||||  | | |||||||| ||| ||| || |||||||||||||||| ||  || ||||||||||||||||    
T  20166 tggatccaaccctaaacaaatctaacatttaagcgcgggcctaaagtttggcaaataaatcgatcgtcaacacgaaatcgaatcacgtaccatcaactcc 20265  T
Q  268 ctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    ||  || ||  ||| |||||||| | |||||||||||||||  ||||||||||||||||    
T  20266 ctgcaaaaacaacaacaagcattaacgactctttcgagtcctcacagtcccatgtcaat 20324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 15846 - 15903
Alignment:
Q  60 gaaattacataagaacgggagggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    |||||||||||| ||| || || ||||||||| |||| ||||||||||||||||||||    
T  15846 gaaattacataaaaactgggggaacataaaacctgacccagtcaacaaccctaacggg 15903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 37573337 - 37573457
Alignment:
Q  208 gtctaaagtt-ggcgaatgaaacgatcgtcaacacgaatcaga-tgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgag 305  Q
    |||||||||| |||||||||| ||||| ||||||||||   || | ||| |||||||||| ||| |||||| |||| |||||||| | ||||||||||||    
T  37573337 gtctaaagtttggcgaatgaatcgatcctcaacacgaagtcgactcacgaaccatcaacttcctgaaacaatgacaacaagcattaacgactctttcgag 37573436  T
Q  306 tccatacagtcccatgtcaat 326  Q
    |||| | ||||||||||||||    
T  37573437 tccacatagtcccatgtcaat 37573457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 5287578 - 5287675
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacg-aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacag 314  Q
    |||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||    |||  |||||||||||| | |||||||||||||||| ||||    
T  5287578 ttggcgaatgaatcgatcgtcaacacgaaatcagatcacgtatcatcaactccct--gccaacaacatcaagcattaacgactctttcgagtccacacag 5287675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 7792831 - 7792927
Alignment:
Q  231 atcgtcaacacg-aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||||||| |||| ||| ||||||||||||||| ||  ||||| || |||||||||| | |||||||||||||||||||| ||| | ||||||    
T  7792831 atcgtcaacacgcaatcggatcacgtaccatcaactctctgcaacaatgaaatcaagcattcacgactctttcgagtccatacactccaacgtcaat 7792927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 15456163 - 15456219
Alignment:
Q  61 aaattacataagaacgggagggacataaaacatgactcagtcaacaaccctaacggg 117  Q
    ||||||||||| ||| || ||||||||||||||||| |||||||||| |||||||||    
T  15456163 aaattacataaaaactggtgggacataaaacatgacccagtcaacaatcctaacggg 15456219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 345
Target Start/End: Complemental strand, 21292519 - 21292380
Alignment:
Q  208 gtctaaagttgg-cgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgag 305  Q
    |||||||||| | |||||||| |||||||||| | ||| || ||| ||| || ||||||| |||  ||||| |||| |||||||| | || |||||||||    
T  21292519 gtctaaagtttgacgaatgaatcgatcgtcaaaatgaaatcggatcacgcactatcaacttcctgcaacaacgacaacaagcattaacgattctttcgag 21292420  T
Q  306 tccatacagtcccatgtcaattaaccaaatgacttggata 345  Q
    ||||||||||| ||| ||||| |||   ||||||||||||    
T  21292419 tccatacagtctcatatcaatcaacaggatgacttggata 21292380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 21949954 - 21949871
Alignment:
Q  243 aatcagatgacgtaccatcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||| ||| |||| ||||||||||| |  |||||  ||| |||||||| | ||||||||| ||||||||||||| |||||||||    
T  21949954 aatcggatcacgtgccatcaactccatgcaacaacaacaacaagcattaacgactctttcaagtccatacagtctcatgtcaat 21949871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 34638683 - 34638616
Alignment:
Q  259 atcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||||||  ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  34638683 atcaactccctgcaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 34638616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 42053516 - 42053583
Alignment:
Q  259 atcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||||||  ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  42053516 atcaactccctgcaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 42053583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 15456253 - 15456303
Alignment:
Q  178 accctaaacaattctaacaattaagcatgagtctaaag-ttggcgaatgaa 227  Q
    ||||||||||||||||||||||||||| | || ||||| ||||||||||||    
T  15456253 accctaaacaattctaacaattaagcacgggtttaaagtttggcgaatgaa 15456303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 13850 - 13796
Alignment:
Q  216 ttggcgaatgaaacgatcgtcaacacgaa-tcagatgacgtaccatcaactccct 269  Q
    |||||||||||||| |||||||||||||| || ||| ||||||||||||||||||    
T  13850 ttggcgaatgaaacaatcgtcaacacgaattcggatcacgtaccatcaactccct 13796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 194845 - 194778
Alignment:
Q  259 atcaactccctaaaacaaggacatcaagcattgatgactctttcgagtccatacagtcccatgtcaat 326  Q
    |||||||||||  ||||| |||| |||||||| | ||||||||| |||||| |||||| |||||||||    
T  194845 atcaactccctgcaacaacgacaacaagcattaacgactctttcaagtccacacagtctcatgtcaat 194778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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