View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10615_low_6 (Length: 322)

Name: NF10615_low_6
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10615_low_6
NF10615_low_6
[»] chr5 (11 HSPs)
chr5 (56-311)||(9659993-9660258)
chr5 (61-116)||(10102894-10102949)
chr5 (61-115)||(13856106-13856160)
chr5 (19-56)||(9660786-9660823)
chr5 (19-56)||(9676353-9676390)
chr5 (61-115)||(10109391-10109445)
chr5 (61-115)||(10212244-10212298)
chr5 (61-110)||(10209698-10209747)
chr5 (61-116)||(10105978-10106033)
chr5 (19-56)||(12107306-12107342)
chr5 (87-115)||(10215876-10215904)
[»] chr1 (1 HSPs)
chr1 (61-106)||(45152083-45152128)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 56 - 311
Target Start/End: Complemental strand, 9660258 - 9659993
Alignment:
Q  56 atgccagtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcaa 155  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9660258 atgccagtttttggaagagtcctattcatggagtgctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcga 9660159  T
Q  156 tggccgagtgtagtaaattttactgttattaagtgatgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaattc 255  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9660158 tggccgagtgtagtaaattttactgttattaagtggtgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaatgc 9660059  T
Q  256 ttcta----------tgtttccagattttgtaaccatttcaatgagttaggagccactttgttctt 311  Q
    || ||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9660058 ttttatatttggtattgtttccagattttgtaaccatttcaatgagttaggagccactttgttctt 9659993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 10102894 - 10102949
Alignment:
Q  61 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt 116  Q
    |||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  10102894 agtttttggaagagtcctcttcattgagggctctgcaaatttagttcaatattttt 10102949  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 13856106 - 13856160
Alignment:
Q  61 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt 115  Q
    ||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||    
T  13856106 agtttttgggagagtcctcttcacagagggctttgcaattttagttcaatatttt 13856160  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9660823 - 9660786
Alignment:
Q  19 attctgaggtgcaacacaaatagtaaaaagcattcaga 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9660823 attctgaggtgcaacacaaatagtaaaaagcattcaga 9660786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9676390 - 9676353
Alignment:
Q  19 attctgaggtgcaacacaaatagtaaaaagcattcaga 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9676390 attctgaggtgcaacacaaatagtaaaaagcattcaga 9676353  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 10109391 - 10109445
Alignment:
Q  61 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt 115  Q
    |||||||||||||||||| || | |||||||||||||||||||||| ||| ||||    
T  10109391 agtttttggaagagtcctctttatggagggctctgcaattttagttaaatttttt 10109445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 10212298 - 10212244
Alignment:
Q  61 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt 115  Q
    ||||||||||||||||||  |||| || ||||||||||||||||| |||||||||    
T  10212298 agtttttggaagagtcctcctcaccgaaggctctgcaattttagtacaatatttt 10212244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 10209747 - 10209698
Alignment:
Q  61 agtttttggaagagtcctattcacggagggctctgcaattttagttcaat 110  Q
    ||||||||||||||| || || | ||||||||||||||||||||||||||    
T  10209747 agtttttggaagagttctctttatggagggctctgcaattttagttcaat 10209698  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 10105978 - 10106033
Alignment:
Q  61 agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt 116  Q
    |||||||||||||||||| || |  ||||||||||||| ||||||||||| |||||    
T  10105978 agtttttggaagagtcctctttattgagggctctgcaaatttagttcaattttttt 10106033  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 12107342 - 12107306
Alignment:
Q  19 attctgaggtgcaacacaaatagtaaaaagcattcaga 56  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12107342 attctgaggtgcaacacaa-tagtaaaaagcattcaga 12107306  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 10215904 - 10215876
Alignment:
Q  87 agggctctgcaattttagttcaatatttt 115  Q
    |||||||||||||||||||||||||||||    
T  10215904 agggctctgcaattttagttcaatatttt 10215876  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 45152083 - 45152128
Alignment:
Q  61 agtttttggaagagtcctattcacggagggctctgcaattttagtt 106  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||    
T  45152083 agtttttggaagagtcctctttacggagggctctgcaatattagtt 45152128  T

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