View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10615_low_7 (Length: 299)
Name: NF10615_low_7
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 50 - 289
Target Start/End: Original strand, 34859815 - 34860054
Alignment:
| Q |
50 |
acatactgataaccattgcatagatagatagtatcacaaaaacccttcaacatttgtgttattgaagtggcttccatcttctacttttccaggactttgt |
149 |
Q |
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| T |
34859815 |
acatattgataaccattgcatagatagatagtatcacaaaaacccttcaacatttgtgttattgaagtggcttccatcttctacttttccaggactttgt |
34859914 |
T |
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| Q |
150 |
aaattaaagaagaaacacagaagacgagcaataaggatcttcaaaaacatctagcttcctacgtatgaactccgttggagtaacacacatctggtgagtt |
249 |
Q |
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| T |
34859915 |
aaattaaagaagaaacacagaagacgagcaataaggatcttcaaaaacatctagcttcctacgtatgaactccgttggagtaacacacatctggtgagtt |
34860014 |
T |
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| Q |
250 |
tcagatatgcacctacacataagagacaatagatcctatg |
289 |
Q |
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| T |
34860015 |
tcagatatgcacctacacataagcgacaatagatcctatg |
34860054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 34859740 - 34859795
Alignment:
| Q |
18 |
attggattggctttaatcttcaactcgtcttaacatactgataaccattgcataga |
73 |
Q |
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| T |
34859740 |
attggattggctttaatcttcaactcgtcttaacatactgataaccatttcataga |
34859795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 23132979 - 23133073
Alignment:
| Q |
77 |
atagtatcacaaaaacccttcaacatttgtgttattgaagtggcttccatcttctacttttccaggacttt---gtaaattaaagaagaaacaca |
168 |
Q |
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| T |
23132979 |
atagtatcacaaaagcccttcaacaattgtgtaattgaagtagcttccatcttctacttttgcacgacttttcggtaaaataaacaagaaacaca |
23133073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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