View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10615_low_8 (Length: 285)
Name: NF10615_low_8
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 36890964 - 36890725
Alignment:
| Q |
20 |
gcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36890964 |
gcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtact |
36890865 |
T |
|
| Q |
120 |
actatcacagccaaatctgtttcatcagataacacatatgtataaccaattatagaaca--atatgtcaatatctgtttctaccnnnnnnncagaagt-a |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
36890864 |
actatcacagccaaatctgtttcatcacataacacatatgtataaccaattatagcacaatatatgtcaatatctgtttctacctaaaaaacagaagtaa |
36890765 |
T |
|
| Q |
217 |
aatatatgtgtcatccaaaaaagctagcagcgcagcttgt |
256 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
36890764 |
aatatatgtgtcatccgaaaaagctagcggcgcagcttgt |
36890725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 36877897 - 36877777
Alignment:
| Q |
20 |
gcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtact |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||| |
|
|
| T |
36877897 |
gcttgcacttttgaaggctgaaggtctagctgcaaggactttgagaggagttgatccttctttgttcagatgtgtgctgaggtaatcatattgatgtact |
36877798 |
T |
|
| Q |
120 |
actatcacagccaaatctgtt |
140 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
36877797 |
attatcacagccaaatctgtt |
36877777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University