View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10615_low_9 (Length: 272)
Name: NF10615_low_9
Description: NF10615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10615_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 34779519 - 34779371
Alignment:
| Q |
107 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
206 |
Q |
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| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
34779420 |
T |
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| Q |
207 |
aatttcaaagggctgtgttctctgatgcgatataaatggctaacttaat |
255 |
Q |
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| T |
34779419 |
aatttcaaagggccgtgttctctgatgcgatataaatggttaacttaat |
34779371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 34682858 - 34682979
Alignment:
| Q |
107 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
206 |
Q |
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| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaa |
34682957 |
T |
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| Q |
207 |
aatttcaaagggctgtgttctc |
228 |
Q |
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| T |
34682958 |
aatttcaaagggctgtgttctc |
34682979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 4108144 - 4108064
Alignment:
| Q |
5 |
tagtagcagagatgttatgtaaggtagaattttttactcatgataattgatgtaggaacattgatgaaataaatgtacata |
85 |
Q |
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| T |
4108144 |
tagtagcaacgatgttatgtaaggtagaattttttactcatgataattcatgtaggaacattgatgaaataaatgtacata |
4108064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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