View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10616_high_11 (Length: 254)

Name: NF10616_high_11
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10616_high_11
NF10616_high_11
[»] chr3 (7 HSPs)
chr3 (91-209)||(242053-242171)
chr3 (183-238)||(52895431-52895486)
chr3 (209-238)||(242009-242038)
chr3 (195-228)||(21720916-21720949)
chr3 (179-228)||(29270461-29270510)
chr3 (173-228)||(43079981-43080037)
chr3 (173-209)||(45331240-45331276)
[»] chr8 (6 HSPs)
chr8 (173-228)||(9130943-9130998)
chr8 (173-237)||(34286610-34286675)
chr8 (173-228)||(13265467-13265523)
chr8 (173-225)||(32213069-32213122)
chr8 (173-209)||(9131073-9131109)
chr8 (173-224)||(28879045-28879097)
[»] chr2 (3 HSPs)
chr2 (180-228)||(9140656-9140704)
chr2 (193-230)||(18276912-18276949)
chr2 (181-228)||(37419900-37419947)
[»] chr6 (3 HSPs)
chr6 (181-228)||(2034285-2034332)
chr6 (173-238)||(10874089-10874154)
chr6 (176-206)||(25779933-25779963)
[»] chr4 (14 HSPs)
chr4 (181-228)||(28663411-28663458)
chr4 (183-228)||(36740887-36740932)
chr4 (173-228)||(7148755-7148811)
chr4 (181-228)||(488440-488487)
chr4 (173-228)||(34633495-34633550)
chr4 (181-224)||(52274176-52274219)
chr4 (173-214)||(896967-897009)
chr4 (198-228)||(3564189-3564219)
chr4 (180-238)||(10046344-10046402)
chr4 (193-238)||(825655-825700)
chr4 (196-225)||(48667710-48667739)
chr4 (173-228)||(28074348-28074404)
chr4 (173-209)||(38876067-38876103)
chr4 (181-225)||(39932810-39932854)
[»] chr7 (3 HSPs)
chr7 (173-228)||(47511026-47511082)
chr7 (172-225)||(33288145-33288199)
chr7 (198-234)||(38372521-38372557)
[»] chr1 (5 HSPs)
chr1 (193-228)||(45267448-45267483)
chr1 (181-225)||(28870210-28870254)
chr1 (184-228)||(36178519-36178563)
chr1 (173-209)||(37712172-37712208)
chr1 (173-228)||(48819282-48819338)
[»] chr5 (5 HSPs)
chr5 (173-224)||(6125274-6125326)
chr5 (173-220)||(17657233-17657281)
chr5 (184-228)||(28625463-28625507)
chr5 (183-215)||(35083241-35083273)
chr5 (184-228)||(42706779-42706823)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 242171 - 242053
Alignment:
Q  91 cattataatcataagagcataatttcaaacagagcagcgaataaactaagatgataacaagcacttttcataagcttatcaaatgaataaacataaaagt 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  242171 cattataatcataagagcataatttcaaacagagcagcaaataaactaagatgataacaaacacttttcataagcttatcaaatgaataaacataaaagt 242072  T
Q  191 taatttatttgcataagct 209  Q
    | |||||||||||||||||    
T  242071 ttatttatttgcataagct 242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 52895431 - 52895486
Alignment:
Q  183 ataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 238  Q
    ||||||||| ||||||||||||||||| ||||  ||| |||||||| |||||||||    
T  52895431 ataaaagtttatttatttgcataagctaaaaattaaggcaatccaaacaagcccta 52895486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 242038 - 242009
Alignment:
Q  209 tcaaaaacaagtcaatccaagcaagcccta 238  Q
    ||||||||||||||||||||||||||||||    
T  242038 tcaaaaacaagtcaatccaagcaagcccta 242009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 21720949 - 21720916
Alignment:
Q  195 ttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||||||||||| ||||||||||||||||||    
T  21720949 ttatttgcataagcttaaaaacaagtcaatccaa 21720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 29270461 - 29270510
Alignment:
Q  179 aaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||||||| | ||||||||||||||||| ||||| ||| ||||||||    
T  29270461 aaacataaaagcttatttatttgcataagctaaaaaataagccaatccaa 29270510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 43079981 - 43080037
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||| ||||||||| | ||||||||||||||||| ||||| ||| ||||||||    
T  43079981 atgaataacacataaaagcttatttatttgcataagctaaaaaataagacaatccaa 43080037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 45331276 - 45331240
Alignment:
Q  173 atgaataaacataaaagttaatttatttgcataagct 209  Q
    |||||| |||||||||||| |||||||||||||||||    
T  45331276 atgaattaacataaaagtttatttatttgcataagct 45331240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 9130998 - 9130943
Alignment:
Q  173 atgaataaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  9130998 atgaattaacataaaagtttatttatttgcataagctcaaaatcaagtcaatccaa 9130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 34286610 - 34286675
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagccct 237  Q
    |||||||| ||||||||| | |||||||| |||||||||||||| |||||||||||| || |||||    
T  34286610 atgaataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaacaggccct 34286675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 13265523 - 13265467
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||| ||||||||| | |||||||||||||| ||| |||||||||||||||||    
T  13265523 atgaataatacataaaagcttatttatttgcataaactcgaaaacaagtcaatccaa 13265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 32213069 - 32213122
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 225  Q
    |||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||    
T  32213069 atgaataatacataaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 9131109 - 9131073
Alignment:
Q  173 atgaataaacataaaagttaatttatttgcataagct 209  Q
    |||||| |||||||||||| |||||||||||||||||    
T  9131109 atgaattaacataaaagtttatttatttgcataagct 9131073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 28879097 - 28879045
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaat 224  Q
    |||||||| ||||||||| | ||||||||||||||||||||||| ||| ||||    
T  28879097 atgaataatacataaaagcttatttatttgcataagctcaaaaataagccaat 28879045  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 9140704 - 9140656
Alignment:
Q  180 aacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  9140704 aacataaaagtttatttatatgcataagctcaaaaataagtcaatccaa 9140656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 18276949 - 18276912
Alignment:
Q  193 atttatttgcataagctcaaaaacaagtcaatccaagc 230  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18276949 atttatttgcataagctcaaaaataagtcaatccaagc 18276912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 37419947 - 37419900
Alignment:
Q  181 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||||| | ||||||||||||||||||||||  ||||||||||||    
T  37419947 acataaaagcttatttatttgcataagctcaaaattaagtcaatccaa 37419900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 2034285 - 2034332
Alignment:
Q  181 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  2034285 acataaaagcttatttatttgcataagctcaaaaacaagccaatccaa 2034332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 10874089 - 10874154
Alignment:
Q  173 atgaataaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 238  Q
    |||||| |||||||||| | ||||||||||||||||| ||||| |||||| ||||| || ||||||    
T  10874089 atgaattaacataaaagcttatttatttgcataagctaaaaaataagtcattccaaacaggcccta 10874154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Original strand, 25779933 - 25779963
Alignment:
Q  176 aataaacataaaagttaatttatttgcataa 206  Q
    |||||||||||||||||||||||||||||||    
T  25779933 aataaacataaaagttaatttatttgcataa 25779963  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 28663458 - 28663411
Alignment:
Q  181 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  28663458 acataaaagctcatttatttgcataagctcaaaaataagtcaatccaa 28663411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 36740932 - 36740887
Alignment:
Q  183 ataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||    
T  36740932 ataaaagcttatttatttgcataagctcaaaaataagtcaatccaa 36740887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 7148811 - 7148755
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||| ||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  7148811 atgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaa 7148755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 488440 - 488487
Alignment:
Q  181 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||||| | | ||||||||||||||||||||| ||||||||||||    
T  488440 acataaaagcttacttatttgcataagctcaaaaataagtcaatccaa 488487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 34633495 - 34633550
Alignment:
Q  173 atgaataaacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||| |||||||||| | |||||||||| |||||| ||||| ||||||||||||    
T  34633495 atgaattaacataaaagcttatttatttgcgtaagcttaaaaataagtcaatccaa 34633550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 52274176 - 52274219
Alignment:
Q  181 acataaaagttaatttatttgcataagctcaaaaacaagtcaat 224  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  52274176 acataaaagtttatttatttgcataagctcaaaaataagccaat 52274219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 897009 - 896967
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaa 214  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  897009 atgaataatacataaaagtttatttatttgcataagctcaaaa 896967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 3564219 - 3564189
Alignment:
Q  198 tttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||||||||||||||||||||||||||    
T  3564219 tttgcataagctcaaaaacaagtcaatccaa 3564189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 10046344 - 10046402
Alignment:
Q  180 aacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 238  Q
    |||||||||| | | |||||| |||||||||||||| |||| |||| ||||||||||||    
T  10046344 aacataaaagcttaattatttacataagctcaaaaataagttaatcgaagcaagcccta 10046402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 825700 - 825655
Alignment:
Q  193 atttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 238  Q
    ||||||||||||||||||||||| ||| |||||||| || ||||||    
T  825700 atttatttgcataagctcaaaaagaagccaatccaaacaggcccta 825655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 48667739 - 48667710
Alignment:
Q  196 tatttgcataagctcaaaaacaagtcaatc 225  Q
    ||||||||||||||||||||||||||||||    
T  48667739 tatttgcataagctcaaaaacaagtcaatc 48667710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 28074404 - 28074348
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||| ||||||||| | ||||||||||||||||  ||||| ||||||||||||    
T  28074404 atgaataatacataaaagcttatttatttgcataagcgaaaaaataagtcaatccaa 28074348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 38876103 - 38876067
Alignment:
Q  173 atgaataaacataaaagttaatttatttgcataagct 209  Q
    |||||| |||||||||||| |||||||||||||||||    
T  38876103 atgaattaacataaaagtttatttatttgcataagct 38876067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 39932810 - 39932854
Alignment:
Q  181 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 225  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||    
T  39932810 acataaaagtttatttatttgcataagtttaaaaataagtcaatc 39932854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 47511082 - 47511026
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||| ||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  47511082 atgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaa 47511026  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 33288145 - 33288199
Alignment:
Q  172 aatgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 225  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||| | |||||||    
T  33288145 aatgaataatacataaaagcttatttatttgcataagctcaaaaatatgtcaatc 33288199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 38372557 - 38372521
Alignment:
Q  198 tttgcataagctcaaaaacaagtcaatccaagcaagc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  38372557 tttgcataagctcaaaaataagtcaatccaaacaagc 38372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 45267483 - 45267448
Alignment:
Q  193 atttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    ||||||||||||||||||||||| ||||||||||||    
T  45267483 atttatttgcataagctcaaaaataagtcaatccaa 45267448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 28870254 - 28870210
Alignment:
Q  181 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 225  Q
    ||||||| ||| ||||||||||||||||||||||| ||| |||||    
T  28870254 acataaatgtttatttatttgcataagctcaaaaataagccaatc 28870210  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 36178563 - 36178519
Alignment:
Q  184 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||| | ||||||||||||||||||||||  ||||||||||||    
T  36178563 taaaagcttatttatttgcataagctcaaaagtaagtcaatccaa 36178519  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 37712172 - 37712208
Alignment:
Q  173 atgaataaacataaaagttaatttatttgcataagct 209  Q
    |||||| |||||||||||| |||||||||||||||||    
T  37712172 atgaattaacataaaagtttatttatttgcataagct 37712208  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 48819338 - 48819282
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||||| |||| |||| | ||||||||||||||||||||||| ||| ||||||||    
T  48819338 atgaataatacattaaagctcatttatttgcataagctcaaaaataagccaatccaa 48819282  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 6125326 - 6125274
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagtcaat 224  Q
    |||||||| ||||||||||| |||||||| |||||| ||||||| ||||||||    
T  6125326 atgaataatacataaaagtttatttatttacataagttcaaaaataagtcaat 6125274  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 17657281 - 17657233
Alignment:
Q  173 atgaataa-acataaaagttaatttatttgcataagctcaaaaacaagt 220  Q
    |||||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  17657281 atgaataatacataaaagcttatttatttgcataagttcaaaaacaagt 17657233  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 28625507 - 28625463
Alignment:
Q  184 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||| | ||||||||||||||||| ||||| ||||||||||||    
T  28625507 taaaagcttatttatttgcataagctaaaaaataagtcaatccaa 28625463  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 35083273 - 35083241
Alignment:
Q  183 ataaaagttaatttatttgcataagctcaaaaa 215  Q
    ||||||||| |||||||||||||||||||||||    
T  35083273 ataaaagtttatttatttgcataagctcaaaaa 35083241  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 42706823 - 42706779
Alignment:
Q  184 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 228  Q
    |||||| | ||||||||||||||||||||||| ||| ||||||||    
T  42706823 taaaagcttatttatttgcataagctcaaaaataagccaatccaa 42706779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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