View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10616_high_2 (Length: 452)

Name: NF10616_high_2
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10616_high_2
NF10616_high_2
[»] chr4 (10 HSPs)
chr4 (2-243)||(24299995-24300238)
chr4 (306-427)||(24298391-24298512)
chr4 (304-357)||(24298815-24298868)
chr4 (256-309)||(23447727-23447780)
chr4 (312-380)||(23402437-23402505)
chr4 (279-383)||(26828190-26828292)
chr4 (312-365)||(23414976-23415028)
chr4 (296-381)||(43698620-43698704)
chr4 (314-360)||(31632982-31633028)
chr4 (312-373)||(26436169-26436230)
[»] chr7 (3 HSPs)
chr7 (2-67)||(3701153-3701218)
chr7 (5-67)||(3693402-3693464)
chr7 (5-67)||(3685661-3685723)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 24300238 - 24299995
Alignment:
Q  2 cagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccaggaatgaaaccctaatgcggtgcataaaattttct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24300238 cagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccatac-ggattacaccaggaatgaaaccctaatgcggtgcataaaattttct 24300140  T
Q  102 cccatcatcttcctgatccaaactctaatgcgaatgcaccgcccctg---nnnnnnnnnncactgcatccaaagctccaacacaagcaaccagaccgcac 198  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||             |||| |||||||||||| ||||||||||||||||||||||    
T  24300139 cccatcgtcttcctgatccaaactctaatgcgaatgcaccgcccctggaaaaaaaaaaaccactacatccaaagctctaacacaagcaaccagaccgcac 24300040  T
Q  199 gcaaacgaggtggctgatactgctgcttccaatgctataattctt 243  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||||    
T  24300039 gcaaatgaggtggctgatactgctgctgccaatgctatagttctt 24299995  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 306 - 427
Target Start/End: Complemental strand, 24298512 - 24298391
Alignment:
Q  306 caattttcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttcaaaagcnnnnnnnnnngaaagaaaacta 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          ||||||||||||    
T  24298512 caattttcattaattccaccactatcatacacaaaaaggatcaacaagatacaattacttcatcacaacttcaaaagcaaaaaaaaaagaaagaaaacta 24298413  T
Q  406 attaaaagatctaattgttcct 427  Q
    ||||||||||||||||||||||    
T  24298412 attaaaagatctaattgttcct 24298391  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 24298868 - 24298815
Alignment:
Q  304 cccaattttcattaattccaccactatcatacacaaaaaggatcaacaagatcc 357  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  24298868 cccaattttcattaattttaccattatcatacacaaaaaggatcaacaagatcc 24298815  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 23447727 - 23447780
Alignment:
Q  256 attagaatataaactcattgaaattgtagaatagaaacaattttgaagcccaat 309  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||| |||||    
T  23447727 attagaatataaacttaaagaaattgtagaatagaaacaattttgaagtccaat 23447780  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 23402505 - 23402437
Alignment:
Q  312 tcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttcaaa 380  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||  | |||||||| ||| |||||||    
T  23402505 tcattaattccaccattatcatacacaaagaggatcaaccagatctcactacttcattacagcttcaaa 23402437  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 383
Target Start/End: Complemental strand, 26828292 - 26828190
Alignment:
Q  279 ttgtagaatagaaacaattttgaagcccaattttcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttca 378  Q
    ||||| |||||||||| |||||||| ||||| | |||||| || |||| | ||||| ||||||| |||||  |||||||||||||||||| ||| |||||    
T  26828292 ttgtaaaatagaaacatttttgaagaccaatat-cattaaatc-accattttcataaacaaaaaagatcagaaagatccaattacttcattacatcttca 26828195  T
Q  379 aaagc 383  Q
    |||||    
T  26828194 aaagc 26828190  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 23414976 - 23415028
Alignment:
Q  312 tcattaattccaccactatcatacacaaaaaggatcaacaagatccaattactt 365  Q
    ||||||||||||||| |||||||||| |||||||||||| |||||| |||||||    
T  23414976 tcattaattccaccattatcatacac-aaaaggatcaaccagatcccattactt 23415028  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 43698620 - 43698704
Alignment:
Q  296 ttttgaagcccaattttcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaacttcaaaa 381  Q
    ||||||||||||| || ||||||||| |||||| | |||||||||| ||| |||| | |||| |||||||||| ||||||| ||||    
T  43698620 ttttgaagcccaaatt-cattaattctaccactttgatacacaaaagggaccaacgatatcccattacttcattacaactttaaaa 43698704  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 31633028 - 31632982
Alignment:
Q  314 attaattccaccactatcatacacaaaaaggatcaacaagatccaat 360  Q
    ||||||||||||| | ||||  |||||||||||||||||||||||||    
T  31633028 attaattccaccattttcattaacaaaaaggatcaacaagatccaat 31632982  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 26436230 - 26436169
Alignment:
Q  312 tcattaattccaccactatcatacacaaaaaggatcaacaagatccaattacttcatcacaa 373  Q
    ||||||||||||||| | ||||  |||||| |||||||||||||||||| | ||||| ||||    
T  26436230 tcattaattccaccattttcattaacaaaagggatcaacaagatccaatcagttcattacaa 26436169  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 3701218 - 3701153
Alignment:
Q  2 cagctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccag 67  Q
    ||||| || |||||||| |||||||||||||| ||||||||||||||  ||||||||||| |||||    
T  3701218 cagcttctgctcgaaataacatggtttgcgccgaacaaaatgaaatcttataccggattagaccag 3701153  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 3693464 - 3693402
Alignment:
Q  5 ctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccag 67  Q
    ||||| ||| |||| | |||||||||| | |||||||||||||||||||||| ||||||||||    
T  3693464 ctcctgctcaaaataatatggtttgcgtcgaacaaaatgaaatcccataccgaattacaccag 3693402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 3685723 - 3685661
Alignment:
Q  5 ctcctcctcgaaatgacatggtttgcgcccaacaaaatgaaatcccataccggattacaccag 67  Q
    ||||| |||||||| |||||||||||||| || ||| | ||||| ||||||| ||||||||||    
T  3685723 ctcctgctcgaaataacatggtttgcgccgaataaactaaaatctcataccgaattacaccag 3685661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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