View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10616_high_4 (Length: 398)
Name: NF10616_high_4
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 43893458 - 43893084
Alignment:
| Q |
7 |
agatgaagaattcaagaaggccttgcaaagctgttacaaggctcttccggtggctggaaaattgattctttgtgaaccggtgttaccggagcagaccgat |
106 |
Q |
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| T |
43893458 |
agatgaagaattcaagaaggccttgcaaagttgttacaaggctcttccggtggccggaaaattgattctttgtgaaccggtgttaccggagcagaccgat |
43893359 |
T |
|
| Q |
107 |
gagagtaaaagaacaagagcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaactgaagaacaattcaaacaac |
206 |
Q |
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| T |
43893358 |
gagagtaaaagaacaagagcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaactgaagaacaattcaaacaac |
43893259 |
T |
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| Q |
207 |
ttggcatttctgctggttttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatgagcagaagaaggctttgaagt |
306 |
Q |
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| T |
43893258 |
ttggcatttctgctggttttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatgagcagaagaaggctttgaagt |
43893159 |
T |
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| Q |
307 |
gtgtggtgctttatgtgatgatggggaaaataataaggaactttgagctaagatgctaattaattggttactgtt |
381 |
Q |
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| T |
43893158 |
gtgtggtgctttatgtgatgatggggaaaataataaggaactttgagctaagatgctaattaattggttactgtt |
43893084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 43904050 - 43903743
Alignment:
| Q |
7 |
agatgaagaattcaagaaggccttgcaaagctgttacaaggctcttccggtggctggaaaattgattctttgtgaaccggtgttaccggagcagaccgat |
106 |
Q |
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||||||||||| |||||||| |||||| | ||| |||||||||||||||||| |||||||||||| ||||||| || |||| |||||||| ||||||| |
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| T |
43904050 |
agatgaagaatgcaagaaggtcttgcagaactgctacaaggctcttccggtgaacggaaaattgattgtttgtgagccagtgtcaccggagctgaccgat |
43903951 |
T |
|
| Q |
107 |
gagagtaaaagaacaagagcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaactgaagaacaattcaaacaac |
206 |
Q |
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|||||| |||||||||||||||||||| | | |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
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| T |
43903950 |
gagagtcaaagaacaagagcattgttgtcgggtgacatattcataatgacaatgtataaaactaagggaaaacacagaactgaagaacaattcaaacagc |
43903851 |
T |
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| Q |
207 |
ttggcatttctgctggttttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatgagcagaagaaggctttgaagt |
306 |
Q |
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|||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||||| ||||||||| |
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| T |
43903850 |
ttggcatttctgctggttttcttcgttttcgtgccttccacattgatccttattttcctgttctagaatttcagaaatgagcagaagaagcctttgaagt |
43903751 |
T |
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| Q |
307 |
gtgtggtg |
314 |
Q |
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||| |||| |
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| T |
43903750 |
gtgcggtg |
43903743 |
T |
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