View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10616_high_5 (Length: 349)
Name: NF10616_high_5
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_high_5 |
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| [»] scaffold0016 (4 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 50 - 336
Target Start/End: Original strand, 33670068 - 33670354
Alignment:
| Q |
50 |
gtggtgtgtctatgaacacatggaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaatt |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33670068 |
gtggtgtgtctatgaacacatggaaagccctctctactttatgcaagagataaaaagcttcgtaacggtatcttaatggattcaatatttgtatagaatt |
33670167 |
T |
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| Q |
150 |
ataatattttactaattcaatagtaaaattttgaagctatactaggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgttt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
33670168 |
ataatattttactaattcaatagtaaaattttgaagctatactaggttacgtattatatctaattcttggagattattgtaatatgaaggcgcatggttt |
33670267 |
T |
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| Q |
250 |
ctcctttttggaccaaagagaaaagacttgtgggatcaaagtggaatctcttatccgttttcgagaagaagtttactagattaattc |
336 |
Q |
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| T |
33670268 |
ctactttttggaccaaagagaaaagacatgtgggatcaaagtggaatctcttatccgttttcgagaagaagtttactagattaattc |
33670354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 56 - 285
Target Start/End: Original strand, 33678310 - 33678534
Alignment:
| Q |
56 |
tgtctatgaacacatggaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataata |
155 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||| | ||||||||||||||| ||| |
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| T |
33678310 |
tgtcaatgaacacatggaaagccctctctactttatgcaagagagaaaa-gctttg-aacgatatctaaatggattttagatttgtatagaatta--ata |
33678405 |
T |
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| Q |
156 |
ttttactaattcaatagtaaaattttgaagctatactaggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgtttctcctt |
255 |
Q |
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| T |
33678406 |
tttttttactt-aatagtaatattttgaagctatactaagttacgtattatatcagattcttggagcttattttaataggaaggagcatggtttctcctt |
33678504 |
T |
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| Q |
256 |
tttggaccaaagagaaaagacttgtgggat |
285 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
33678505 |
tttggaccaaagagaaaagacgtgtgggat |
33678534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 272
Target Start/End: Original strand, 33698967 - 33699188
Alignment:
| Q |
56 |
tgtctatgaacacatggaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataat- |
154 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||| ||| ||||||| ||| || |||||||||||||||| || |||||| ||||||| | | |
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| T |
33698967 |
tgtcaatgaacacatggaaagccctccctactttatgcaaaaga-aaaaagc-ttggaagggtatcttaatggatttaagatttgtttagaattgttgtt |
33699064 |
T |
|
| Q |
155 |
-attttactaattcaatagtaaaattttgaagct-----atactaggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgtt |
248 |
Q |
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||||||||||||||| |||| | |||||||| ||| |||||| |||||||||| | |||||||||| ||||||||||| |||| |||| || |
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| T |
33699065 |
atttttactaattcaatggtaatctcttgaagctagaagatattaggttgcgtattatatttgattcttggagattattgtaatagaaaggagcatggtc |
33699164 |
T |
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| Q |
249 |
tctcctttttggaccaaagagaaa |
272 |
Q |
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|| |||||||||||||||||||| |
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| T |
33699165 |
tcctctttttggaccaaagagaaa |
33699188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 21117346 - 21117392
Alignment:
| Q |
58 |
tctatgaacacatggaaagccctctctactttatgcaagagagaaaa |
104 |
Q |
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| T |
21117346 |
tctatgaacacatggaaagccctctcgactttatgcaaaagagaaaa |
21117392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 33678551 - 33678601
Alignment:
| Q |
286 |
caaagtggaatctcttatccgttttcgagaagaagtttactagattaattc |
336 |
Q |
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| T |
33678551 |
caaagtggaatctcttatcctttcctgagaagaagtttcctagattaattc |
33678601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 105528 - 105671
Alignment:
| Q |
50 |
gtggtgtgtctatgaacacatggaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaatt |
149 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||| |||| |||| |||| |
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| T |
105528 |
gtggcgtgtctatgaacacatggaaagccctctctactttatgcaagagagaaaa-gctttg-aaggatatcttaatggattcaagatttttataaaatt |
105625 |
T |
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| Q |
150 |
ataatattttactaattcaatagtaaaattttgaagctatactagg |
195 |
Q |
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|| || |||||||||||||||||||||||||||||||||| ||||| |
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| T |
105626 |
atcattttttactaattcaatagtaaaattttgaagctatgctagg |
105671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 56 - 272
Target Start/End: Complemental strand, 82196 - 81981
Alignment:
| Q |
56 |
tgtctatgaacacatggaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataata |
155 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||| |||||||| | |||| || ||||| |||||||||| || |||||||||||||||| | | |
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| T |
82196 |
tgtcaatgaacacatagaaagccctctctactttatgcaaaagagaaaa-gttttg-aagggtattttaatggatttaaaatttgtatagaattatta-a |
82100 |
T |
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| Q |
156 |
ttttactaattcaatagtaaaattttgaagctatac--taggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgtttctcc |
253 |
Q |
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|||||||||||||||||||| | ||||||||| | |||||| ||||||||| | |||||||||| ||||||||||| |||| |||| |||||| | |
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| T |
82099 |
ttttactaattcaatagtaatctcttgaagctagatcttaggttgtgtattatatttgattcttggagattattgtaatagaaaggagcatggtttcttc |
82000 |
T |
|
| Q |
254 |
tttttggaccaaagagaaa |
272 |
Q |
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||||||||||| ||||||| |
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| T |
81999 |
tttttggaccagagagaaa |
81981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 89896 - 89847
Alignment:
| Q |
55 |
gtgtctatgaacacatggaaagccctctctactttatgcaagagagaaaa |
104 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
89896 |
gtgtctatgaacatatggaaagtcctctctactttatgcaaaagagaaaa |
89847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 105681 - 105730
Alignment:
| Q |
225 |
attgtaatatgaaggcgcattgtttctcctttttggaccaaagagaaaag |
274 |
Q |
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||||||| | |||||||||| |||||||||||| |||||||||||||||| |
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| T |
105681 |
attgtaacaggaaggcgcatggtttctccttttcggaccaaagagaaaag |
105730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 30855 - 30806
Alignment:
| Q |
55 |
gtgtctatgaacacatggaaagccctctctactttatgcaagagagaaaa |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
30855 |
gtgtctatgaacacatggaaatccctctcgactttatgcaaaagagaaaa |
30806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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