View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10616_high_6 (Length: 329)

Name: NF10616_high_6
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10616_high_6
NF10616_high_6
[»] chr5 (5 HSPs)
chr5 (10-257)||(20700046-20700293)
chr5 (10-261)||(14810170-14810422)
chr5 (10-261)||(18587796-18588047)
chr5 (262-308)||(14810096-14810142)
chr5 (10-75)||(42563094-42563159)
[»] chr4 (4 HSPs)
chr4 (14-261)||(29575457-29575705)
chr4 (90-257)||(26000595-26000762)
chr4 (262-311)||(26000514-26000563)
chr4 (268-317)||(29575739-29575788)
[»] chr7 (3 HSPs)
chr7 (10-262)||(13010202-13010455)
chr7 (10-261)||(34692925-34693178)
chr7 (262-317)||(13010482-13010537)
[»] chr1 (5 HSPs)
chr1 (10-261)||(18657052-18657304)
chr1 (10-111)||(3230592-3230693)
chr1 (10-160)||(20948498-20948649)
chr1 (180-261)||(3230423-3230504)
chr1 (82-145)||(3230528-3230592)
[»] chr8 (1 HSPs)
chr8 (136-258)||(913983-914105)
[»] scaffold0862 (1 HSPs)
scaffold0862 (262-312)||(4462-4512)
[»] chr2 (1 HSPs)
chr2 (10-99)||(9680275-9680364)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 20700293 - 20700046
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 109  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||    
T  20700293 acatcaaaagtactgcgtgaagcatgggataaggcttcttgtgaaagaacatgagcactaccgtttgcttgacgcctagtaaaaacaactacaaagtcgt 20700194  T
Q  110 tataatgatcaagtaaggttctacagtttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatca 209  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  20700193 tatagtgatcaagtaaggttctagagtttggataattgaaccatactcagaaagattcatcttactattgtgcacatcatctgcaaccattttacaatca 20700094  T
Q  210 agctcaaaaataacattgtggtaccctaatgaagaaatccattgaatg 257  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  20700093 agctcaaaaatgacatcgtggtaccctaatgaagaaatccattgaatg 20700046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 14810422 - 14810170
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 109  Q
    |||||||||||| || |||||||||| |||||||||||||||| |||| |||||||  |||||||||| ||| |||||||||||||||||||||||||||    
T  14810422 acatcaaaagtattgtgtgaagcatgagataaggcttctcgtgcaagagcatgagcgctaccgtttgcctgacgcctagtaaaaacaactacaaagttgt 14810323  T
Q  110 tataatgatcaagtaaggttctacag-tttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 208  Q
    |||| |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||    
T  14810322 tatagtgatcaagtaaggttctataactttggataattgaaccatactcagagagattcttcttacgatcgtgcacatcatccacaaccattttacaatc 14810223  T
Q  209 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 261  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  14810222 aagctcaaaaatgacattgtggtatcctaatgaagaaatccactgaatgcctt 14810170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 18587796 - 18588047
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 109  Q
    ||||||||||||||| |||||| |||||||| || | |||||  |||| |||||||  || |||||| || | |||||||||||||||||||||||| ||    
T  18587796 acatcaaaagtactgtgtgaagtatgggatagggttgctcgtacaagagcatgagcgctatcgtttgttttacgcctagtaaaaacaactacaaagtcgt 18587895  T
Q  110 tataatgatcaagtaaggttct-acagtttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 208  Q
     ||| ||||||  ||||||||| | | |||||||||| ||| |||||| |||||||||  | ||||| ||| |||||||||| || ||| ||||||||||    
T  18587896 aatagtgatcacataaggttctaaaaatttggataatcgaatcatacttagagagattaat-ttactgttgcgcacatcatccacgacccttttacaatc 18587994  T
Q  209 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 261  Q
     |||| |||| | |  |||||||| ||||| ||||||||||||||||||||||    
T  18587995 tagctaaaaattcatcttgtggtatcctaacgaagaaatccattgaatgcctt 18588047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 14810142 - 14810096
Alignment:
Q  262 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaat 308  Q
    |||||||||||||| |||||||||||| |||||| ||||||| ||||    
T  14810142 ctattgtcatcacagcctcacaataagttgtcaaggcaacaacaaat 14810096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 42563094 - 42563159
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgttt 75  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||  ||| |||||||  ||||||||    
T  42563094 acatcaaaagtacttcctgaagcatgggataaggctgctcatgtgagagcatgagcgctaccgttt 42563159  T

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Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 29575457 - 29575705
Alignment:
Q  14 caaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgttata 113  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||  |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  29575457 caaaagtactgcgtgaagcatgggataaggcttctcgtgcaagagcatgagcgctaccatttgcttgacgcctagtaaaaacaactacaaagtcgttata 29575556  T
Q  114 atgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatcaagc 212  Q
     |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  29575557 gtgatcaagtaaggttctacagttttggatgattgaaccatactcagagagattcatcttactattgtgcacatcatctacaaccattttacaatccagc 29575656  T
Q  213 tcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 261  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29575657 tcaaaaatgacattgtggtaccctaatgaagaaatccattgaatgcctt 29575705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 26000762 - 26000595
Alignment:
Q  90 aaaaacaactacaaagttgttataatgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatca 188  Q
    ||||| || ||||||||  ||| | |||||||||||||||||| | ||| ||| ||| |||| ||||| |||||||||   |||| | ||||||||||||    
T  26000762 aaaaaaaattacaaagtctttaaagtgatcaagtaaggttctaaaattttggagaatcgaac-atactgagagagattaagcttattgttgtgcacatca 26000664  T
Q  189 tctacaaccattttacaatcaagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatg 257  Q
    || ||||||||||||||||| ||||||||||| || || | ||| ||||| ||||||||| ||| ||||    
T  26000663 tccacaaccattttacaatccagctcaaaaatcaccttatcgtatcctaaggaagaaatcgattcaatg 26000595  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 26000563 - 26000514
Alignment:
Q  262 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaatgtg 311  Q
    ||||||||||||||||||||||||| | ||||| |||| |||| ||||||    
T  26000563 ctattgtcatcacaacctcacaatatgttgtcatagcagcaattaatgtg 26000514  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 29575739 - 29575788
Alignment:
Q  268 tcatcacaacctcacaataagatgtcaaagcaacaataaatgtgcctttc 317  Q
    |||||||| ||||||| |||| |||||||||| |||||||||||| ||||    
T  29575739 tcatcacagcctcacagtaagctgtcaaagcagcaataaatgtgcatttc 29575788  T

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Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 13010202 - 13010455
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 109  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| |||| |||| ||  |||||||| ||||| |||||||||||||||||||||||| ||    
T  13010202 acatcaaaagtactgcgtgaaacatgggataagacttctcgtgcaagagcatgggcgctaccgtttccttgacgcctagtaaaaacaactacaaagtcgt 13010301  T
Q  110 tataatgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 208  Q
    |||| |||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||    
T  13010302 tatagtgatcaagtaaggttctacaattttggacaatcgaaccatactcagagagattcatcttaccgttgtgcacatcatccacaaccattttacaatc 13010401  T
Q  209 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgccttc 262  Q
    ||||| |||||| ||||||||||| | |||||||||||||||||||||||||||    
T  13010402 aagcttaaaaatcacattgtggtatcgtaatgaagaaatccattgaatgccttc 13010455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 34693178 - 34692925
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagtt-g 108  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||| ||||| |  ||| |||||||||| ||| ||||||||||||||||||||| |    
T  34693178 acatcaaaagtactgcgtgaagcatgggataaggtttctcgtacaagagcatgaacgctactgtttgcttgacgccaagtaaaaacaactacaaagtttg 34693079  T
Q  109 ttataatgatcaagtaaggttctacagtttg-gataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaat 207  Q
    ||||| |||||||||||| | ||||| |||  |||||| ||| ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  34693078 ttatagtgatcaagtaagatcctacaattttagataatcgaatcatactcagcgagattcatcttactattgcgcacatcatccacaaccattttacaat 34692979  T
Q  208 caagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 261  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||    
T  34692978 caagctcaaaaatcacattgtggtatcctaacgaagaaatccatcgaatgcctt 34692925  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 13010482 - 13010537
Alignment:
Q  262 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaatgtgcctttc 317  Q
    ||||||| ||||||||||||||||||| |||||||||  ||| |||||||||||||    
T  13010482 ctattgtaatcacaacctcacaataagttgtcaaagctgcaacaaatgtgcctttc 13010537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 18657052 - 18657304
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 109  Q
    |||||||||||| ||||||||||||||| ||| |||| ||||| |||| |||||||  |||||||||||||| |||||||||||||||||||||| | ||    
T  18657052 acatcaaaagtaatgcgtgaagcatgggctaatgcttatcgtgcaagagcatgagcgctaccgtttgcttgacgcctagtaaaaacaactacaaattcgt 18657151  T
Q  110 tataatgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 208  Q
    ||||||||| ||||||||||||||| ||| |||| || |||||||||||||||| |||| |||||||| ||| ||||||||| |||||||||||||||||    
T  18657152 tataatgattaagtaaggttctacaattttggatgatcgaaccatactcagagatattcatcttactaatgtacacatcatccacaaccattttacaatc 18657251  T
Q  209 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 261  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  18657252 aagctcaaaaatgacattgtggtatcctaatgaagaaatccattgaatgcctt 18657304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 3230693 - 3230592
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 109  Q
    |||||||||||| |  |||||||||||||||||| |  ||||| |||| ||||| |  |   |||||||||| ||||| |||||||||||||||||||||    
T  3230693 acatcaaaagtattatgtgaagcatgggataaggttgttcgtgcaagagcatgaacgctcttgtttgcttgatgcctaataaaaacaactacaaagttgt 3230594  T
Q  110 ta 111  Q
    ||    
T  3230593 ta 3230592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 20948649 - 20948498
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 109  Q
    ||||||||  || |||| |||||||||||||| ||| ||| || ||| ||||||||  |||||||||||||| |||||  ||||||||  |   | ||||    
T  20948649 acatcaaatataatgcgagaagcatgggataaagctgctcttgcaagtacatgagcgctaccgtttgcttgacgcctaacaaaaacaatcaagtaattgt 20948550  T
Q  110 tataatgatcaagtaaggttctacagt-ttggataattgaaccatactcaga 160  Q
    |||||  || |||||||||||| || | ||| ||||||||| ||||||||||    
T  20948549 tataagaattaagtaaggttctgcactgttgtataattgaatcatactcaga 20948498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 3230504 - 3230423
Alignment:
Q  180 tgcacatcatctacaaccattttacaatcaagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 261  Q
    ||||||||||||||||||||||||||||| | | ||||||| |  | |||||| || ||  ||||||| |||||||||||||    
T  3230504 tgcacatcatctacaaccattttacaatccaacacaaaaatcatctcgtggtatcccaagaaagaaatacattgaatgcctt 3230423  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 3230592 - 3230528
Alignment:
Q  82 agcctagtaaaaacaactacaaagttgttataatgatcaagtaaggttctac-agtttggataat 145  Q
    |||||| |||||||| ||||||||| |||||| ||||||||||| ||| ||| | ||||||||||    
T  3230592 agcctaataaaaacagctacaaagtcgttatagtgatcaagtaaagttgtacaattttggataat 3230528  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 913983 - 914105
Alignment:
Q  136 tttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatcaagctcaaaaataacattgtggtaccc 235  Q
    |||||||||| |||||||| ||| |||||||  ||| | | |||||||||||||||||||||||||||||||| | ||||||||| |  || ||||| ||    
T  913983 tttggataatcgaaccatattcaaagagattaatctaattgttgtgcacatcatctacaaccattttacaatccaactcaaaaatcatcttttggtatcc 914082  T
Q  236 taatgaagaaatccattgaatgc 258  Q
     ||  ||||||| ||||||||||    
T  914083 caagaaagaaatacattgaatgc 914105  T

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Target: scaffold0862 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 4512 - 4462
Alignment:
Q  262 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaatgtgc 312  Q
    ||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||    
T  4512 ctattgtcatcacaacctcgcaataagttgttaaagcagcaacaaatgtgc 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 9680364 - 9680275
Alignment:
Q  10 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaact 99  Q
    ||||||||| |||||| ||||||||| ||||| | | ||  || |||| |||||||  | |||||||||||| |||||||||| ||||||    
T  9680364 acatcaaaaatactgcttgaagcatgagataaagttgcttttgcaagagcatgagcgcttccgtttgcttgacgcctagtaaacacaact 9680275  T

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