View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10616_high_9 (Length: 294)
Name: NF10616_high_9
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14901800 - 14901526
Alignment:
| Q |
1 |
tgaatatgactgatattagttcaattctaaccaaataatacat--gagttgaataatacaaataaaatcaactataaaaaactcaaagtggctcgtgaca |
98 |
Q |
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| T |
14901800 |
tgaatatcactgatattagttcaatcctaaccaaataatacatttgagttgaataatacaaataaaatcaactatgaaaaactcaaagtggctcgtgaca |
14901701 |
T |
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| Q |
99 |
tttaagctaatgacatttactatgattgatttctcacaactgttattccaaacacaatacacactcaacttaaaaagagttcatcatttgaacaaagtat |
198 |
Q |
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| T |
14901700 |
tttaagctaatgacatttactatgattgatttctcacaactgttattccaaacacaatacacactcaacttaaaa-------atcatttgaacaacgtat |
14901608 |
T |
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| Q |
199 |
caagggttcttaatctttattctcaacttcctagcaatctgtgctgctttaggatggctaggcctcttattactatggtatt |
280 |
Q |
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| T |
14901607 |
caagggttcttaatctttattctcaacttccgagcaatctgtgctgctttaggatggctaggcctcttattactatggtatt |
14901526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 14908442 - 14908289
Alignment:
| Q |
130 |
tctcacaactgttattccaaacacaatacacactcaacttaaaaagagttcatcat---ttgaacaaagtatcaagggttcttaatctttattctcaact |
226 |
Q |
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| T |
14908442 |
tctcacaactattattccaaacacaatacacactcaagttgaaaatagttcatcatcgtttgaacaaagtatcaagggttcttaacctttattcttaact |
14908343 |
T |
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| Q |
227 |
tcctagcaatctgtgctgctttaggatggctaggcctcttattactatggtatt |
280 |
Q |
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| T |
14908342 |
tccgagcaatctgtgctgctttaggatggctaggccttttattactatggtatt |
14908289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 14913014 - 14912933
Alignment:
| Q |
42 |
atgagttgaataatacaaataaaatcaactataaaaaactcaaagtggctcgtgacatttaagctaatgacatttactatga |
123 |
Q |
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|||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
14913014 |
atgaattgaataattcaaatgaaatcaactataaaaaactcaaagtggctcgtgacattcaagctactgacatttactatga |
14912933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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