View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10616_low_1 (Length: 466)
Name: NF10616_low_1
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_low_1 |
 | |
|
| [»] chr7 (22 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 22)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 22814668 - 22815108
Alignment:
| Q |
11 |
caaaggcaacccaacagttaaaagttttgacnnnnnnnnctcagcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccatta |
110 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||| ||| | |||||||||||||| |||||| |
|
|
| T |
22814668 |
caaaggcaacccaacagttaaaaatttagacttttttacctcagcaaatactgttagcttaggaagttcagatatttcaaggttttgagcttggccatta |
22814767 |
T |
|
| Q |
111 |
accttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagat |
210 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||| || || | ||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||| |
|
|
| T |
22814768 |
accttaaaactccacccaagaatataatgagaagctacaagtaaccctgttgaagatgagaatccaacatacattctattgttgagaattgaagaaagat |
22814867 |
T |
|
| Q |
211 |
ctttggtcattgataacaaaggtcgtgttggtttaacaacaaataaaccataataataatcaatactaattggagctaaagtaacatcaatctttttctt |
310 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| | | | | ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22814868 |
ctttggtcaatgataacaaaggttgtgttggttta---------------ttactagcaccaacactcattggagctaaagtaacatcaatctttttctt |
22814952 |
T |
|
| Q |
311 |
cactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcatgagttgaa |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| | ||||||| ||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
22814953 |
cactccatcatagtcaatccatacctgtataggaaatccattggaaagggataactccctgaattgaccatgatcattataatatcctgcaggagttgaa |
22815052 |
T |
|
| Q |
411 |
ttagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
466 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22815053 |
ttagctgatttcaaataattgatatcgataccaacatggttatcattgatatcatc |
22815108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 64 - 466
Target Start/End: Original strand, 22809335 - 22809725
Alignment:
| Q |
64 |
ttagctcaggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataattgaccctgttga |
163 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||| |
|
|
| T |
22809335 |
ttagctcaggaagtttagagatatcaaggttttgagcttgaccattaaccttaaaactccaaccaagaacataatgagaagatagaatagaacctgttga |
22809434 |
T |
|
| Q |
164 |
agatgagaatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaacaaataaaccataa |
263 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
22809435 |
agatgagaatccaacatacatactagtgttaagaattggagaaagatctttggtgaatgataacaaaggtcgtgttggtttaacaac------------a |
22809522 |
T |
|
| Q |
264 |
taataatcaatactaattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtccactggtaagggata |
363 |
Q |
| |
|
| | || ||| | ||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| || ||||||| |||||| |||| | |
|
|
| T |
22809523 |
ttaaaaccaacattaattggagctaaagtagcatcaatctttttcttttcaccatcatattcaatccatacatgcataggatagccactgaaaaggctca |
22809622 |
T |
|
| Q |
364 |
aattcctgaatcgaccagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatc |
463 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22809623 |
tattcttgaattgaccattactatcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaatatggttatcattgatatc |
22809722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 22830672 - 22831112
Alignment:
| Q |
11 |
caaaggcaacccaacagttaaaagttttgacnnnnnnnnctcagcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccatta |
110 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| ||||||||||||| || ||||||| ||||||||| | |||||||||| ||| |||||| |
|
|
| T |
22830672 |
caaaggcaaccgaacagttaaaaatttggacttttttttctcagcaaatactctttctccaggaaggtcagagatttcaaggttttgagattggccatta |
22830771 |
T |
|
| Q |
111 |
accttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagat |
210 |
Q |
| |
|
||| |||||||||||| | ||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||| |
|
|
| T |
22830772 |
accataaaactccaaccatgaatataatgagaagctgcaatgaaccctgttgaagatgagaatccaacatacattctattgttgagaattggggaaagat |
22830871 |
T |
|
| Q |
211 |
ctttggtcattgataacaaaggtcgtgttggtttaacaacaaataaaccataataataatcaatactaattggagctaaagtaacatcaatctttttctt |
310 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| | ||| | ||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
22830872 |
ctttggtcaatgataacgtcggttgtgttggtttatgactaaa---------------accaacactaactggagctaaggtaacatcaatctttttctt |
22830956 |
T |
|
| Q |
311 |
cactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcatgagttgaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22830957 |
cactccatcatattcaatccatacctgcataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcaggagttgaa |
22831056 |
T |
|
| Q |
411 |
ttagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
22831057 |
ttagctgatttcaaatcattgatatcaattccaacatgattatcattgatatcatc |
22831112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 71 - 466
Target Start/End: Original strand, 22888993 - 22889373
Alignment:
| Q |
71 |
aggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgag |
170 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| || ||| ||||||||||||||||| |
|
|
| T |
22888993 |
aggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaagaatatactgagaagctaccattaaccctgttgaagatgag |
22889092 |
T |
|
| Q |
171 |
aatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaacaaataaaccataataataat |
270 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | | | | |
|
|
| T |
22889093 |
aatccaacatacattctattgttgagaattgaagaaagatctttggtcaatgataacaaaggttgtgttggttta---------------ttactagcac |
22889177 |
T |
|
| Q |
271 |
caatactaattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcct |
370 |
Q |
| |
|
||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||| | | |
|
|
| T |
22889178 |
caacactcattggtgctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgcatagggtatccactggaaagggataaatcctt |
22889277 |
T |
|
| Q |
371 |
gaatcgaccagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
466 |
Q |
| |
|
|||| ||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
22889278 |
gaattgaccataaccatcataatatcctgcaggagttgaatcagctgatttcaaatcattgatatcaattccaacatggttatcgttgatatcatc |
22889373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 53 - 466
Target Start/End: Original strand, 22858142 - 22858543
Alignment:
| Q |
53 |
agcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataatt |
152 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||| ||||| |||||| |||| || |||| |
|
|
| T |
22858142 |
agcaaatattcttagctcaggaagtttagagatttcaaggttttgagcttggccattaaccttaaaactccaaccaagaatataatgggaagctacaatt |
22858241 |
T |
|
| Q |
153 |
gaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaacaa |
252 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||| || | ||||||||||||||||| |||||||||||| |
|
|
| T |
22858242 |
accccggttgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttcgtgaatgataacaaaggtcgtgctggtttaacaac-- |
22858339 |
T |
|
| Q |
253 |
ataaaccataataataatcaatactaattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtccact |
352 |
Q |
| |
|
|| | || ||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
22858340 |
----------attacaaccaaaattaattggagctaatgtaacatcaatatttttcttcactccatcatattctatccatacctgcataggatatccact |
22858429 |
T |
|
| Q |
353 |
ggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatggtta |
452 |
Q |
| |
|
| ||||||||| | ||||||||||| || ||| ||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
22858430 |
agaaagggataagtcgttgaatcgaccaatagcattatagtatcctgcaggagttgaattagctgatttcaaattattgatgtcaataccagcatggtta |
22858529 |
T |
|
| Q |
453 |
tcattgatatcatc |
466 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
22858530 |
ttattgatatcatc |
22858543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 51 - 436
Target Start/End: Original strand, 22880272 - 22880642
Alignment:
| Q |
51 |
tcagcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataa |
150 |
Q |
| |
|
|||||||||||| || ||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |
|
|
| T |
22880272 |
tcagcaaatactattggctcatgaagctcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaagaacataatgagaagctaaaa |
22880371 |
T |
|
| Q |
151 |
ttgaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaac |
250 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
22880372 |
ttaaccttgttgaagatgataatccaacatacatactattgttgagaattggagaaagatctttggtcaatgacaacaaatgtcgtgttggttt------ |
22880465 |
T |
|
| Q |
251 |
aaataaaccataataataatcaatactaattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtcca |
350 |
Q |
| |
|
|| || | || ||| |||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |||| |||| |
|
|
| T |
22880466 |
---------attattaaaaccaacactaatcggagctaatgtaacctcaatctttttcttcactccatcatagtcaatccatacctgcatgggatatcca |
22880556 |
T |
|
| Q |
351 |
ctggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatc |
436 |
Q |
| |
|
|||| ||||||||||| | |||||||| || ||||||||||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
22880557 |
ctggaaagggataaatccttgaatcgatcataatcatcataatatcctgcagaaattgaatttactgatttcaaatcattgatatc |
22880642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 22839693 - 22840133
Alignment:
| Q |
11 |
caaaggcaacccaacagttaaaagttttgacnnnnnnnnctcagcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccatta |
110 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| ||||||||||||| || ||||||| ||||||||| | |||||||||| ||| |||||| |
|
|
| T |
22839693 |
caaaggcaaccgaacagttaaaaatttggacttttttttctcagcaaatactctttctccaggaaggtcagagatttcaaggttttgagattggccatta |
22839792 |
T |
|
| Q |
111 |
accttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagat |
210 |
Q |
| |
|
||| |||||||||||| | ||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||| |
|
|
| T |
22839793 |
accataaaactccaaccatgaatataatgagaagctgcaatgaaccctgttgaagatgagaatccaacatacattctattgttgagaattggggaaagat |
22839892 |
T |
|
| Q |
211 |
ctttggtcattgataacaaaggtcgtgttggtttaacaacaaataaaccataataataatcaatactaattggagctaaagtaacatcaatctttttctt |
310 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| | ||| | ||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
22839893 |
ctttggtcaatgataacgtcggttgtgttggtttatgactaaa---------------accaacactaaatggagctaaggtaacatcaatctttttctt |
22839977 |
T |
|
| Q |
311 |
cactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcatgagttgaa |
410 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||| |||||||| |||||||||| |||||||||| | ||||| |||||||||||| |||||||| |
|
|
| T |
22839978 |
cactctatcatattcaatccatacttgcataggatatccactggagagggataaatccctgaatcgattatattcatcgtaatatcctgcaggagttgaa |
22840077 |
T |
|
| Q |
411 |
ttagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22840078 |
ttagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
22840133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 277 - 466
Target Start/End: Original strand, 22893836 - 22894025
Alignment:
| Q |
277 |
taattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcctgaatcg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||| ||||| || |||| ||||| | |
|
|
| T |
22893836 |
taattggagctaaagtaacatcaatctttttcttttcaccatcatattcaatccatacctgcataggatagccactgataaggcttatattcttgaattg |
22893935 |
T |
|
| Q |
377 |
accagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
466 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22893936 |
accattaccatcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
22894025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 22805019 - 22805199
Alignment:
| Q |
71 |
aggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgag |
170 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | || | ||||||||||||||||| |
|
|
| T |
22805019 |
aggaaattgagagattacaaggttttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctgcaagtaaccctgttgaagatgag |
22805118 |
T |
|
| Q |
171 |
aatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaaca |
251 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
22805119 |
aatccaacatacatactattgttaagaattggagaaagatctttggtcattgataacgaaggtcctgttggtttaacaaca |
22805199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 277 - 465
Target Start/End: Original strand, 22898155 - 22898343
Alignment:
| Q |
277 |
taattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcctgaatcg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||| ||||| |||||| ||| | | |
|
|
| T |
22898155 |
taattggagctaaagtaacatcaatctttttcttttcaccatcatattcaatccatacctgcataggattgccactgaaaagggtcaaattcttgagttg |
22898254 |
T |
|
| Q |
377 |
accagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcat |
465 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22898255 |
accattaacatcataatatcctgcaggagttgatttagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcat |
22898343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 22913375 - 22913555
Alignment:
| Q |
71 |
aggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgag |
170 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
22913375 |
aggaagttcagagattacaagattttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagttagaattgaacctgttgaagatgag |
22913474 |
T |
|
| Q |
171 |
aatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaaca |
251 |
Q |
| |
|
|||||||||||||||||| | | |||||||| ||||||||||||| ||| ||||||||||||| || |||||||||||||| |
|
|
| T |
22913475 |
aatccaacatacatactagtgttaagaattgaagaaagatctttgttcaatgataacaaaggttgttttggtttaacaaca |
22913555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 22893595 - 22893834
Alignment:
| Q |
12 |
aaaggcaacccaacagttaaaagttttgacnnnnnnnnctcagcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccattaa |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| ||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22893595 |
aaaggcaacccaacagttaaaaaatttgatttcgttttctcagctaatactggtaactcaggaagttcagagattacaaggttttgagcttgaccattaa |
22893694 |
T |
|
| Q |
112 |
ccttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagatc |
211 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || || ||| || || | ||||| |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
22893695 |
tcttaaaactccaaccaagaatataatgagaagttagaaatgaaccagtagctgatgaaaatccaacatacatactattgttaagaattggagaaagatc |
22893794 |
T |
|
| Q |
212 |
tttggtcattgataacaaaggtcgtgttggtttaacaaca |
251 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
22893795 |
tttggtcaatgataacaaaggttgttttggtttaacaaca |
22893834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 53 - 245
Target Start/End: Original strand, 22885308 - 22885500
Alignment:
| Q |
53 |
agcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataatt |
152 |
Q |
| |
|
|||||||| | || |||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||| ||||| ||||||||||| || |||| |
|
|
| T |
22885308 |
agcaaatattcttggctcaggaagttcagagatttcaaggttttgagcttggctattaaccttaaaactccaaccaagaatataatgagaagctacaatt |
22885407 |
T |
|
| Q |
153 |
gaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggttta |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
22885408 |
aaccctgttgaagatgagaatccaacatacattctattgttgagtattggagaaagatctttggtcaatgataacaaaggttgtgttggttta |
22885500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 22875623 - 22875797
Alignment:
| Q |
71 |
aggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgag |
170 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||| | ||||||||||||||| |
|
|
| T |
22875623 |
aggaagttcagagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag |
22875722 |
T |
|
| Q |
171 |
aatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggttta |
245 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
22875723 |
aatccaacatacattctattgttgagaattggagaaagatctttggtcaatgataacaaaggttgtgttggttta |
22875797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 279 - 465
Target Start/End: Original strand, 22875810 - 22875996
Alignment:
| Q |
279 |
attggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcctgaatcgac |
378 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
22875810 |
attggagctaaagtaacatcaatcttttttttcactccatcatagtcaatccatacctgcatgggatatccactgaaaagggataaatccctgaatcgat |
22875909 |
T |
|
| Q |
379 |
cagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatggttatcattgatatcat |
465 |
Q |
| |
|
| ||||| |||||||||| | ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
22875910 |
tatattcatcgtaatatcctgtagaagttgaaatagctgatttcaaatcattgatatcaattccaacatggttatcatcgatatcat |
22875996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 22897967 - 22898153
Alignment:
| Q |
65 |
tagctcaggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataattgaccctgttgaa |
164 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| | || ||| || || | |
|
|
| T |
22897967 |
tagcttaggaagttcagagattacaaggttttcagcttgaccattaaccttaaaactccaaccaagaatataatgagaagtgaaaactgaaccagtagct |
22898066 |
T |
|
| Q |
165 |
gatgagaatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaaca |
251 |
Q |
| |
|
||||| |||||||||||||||||||| | | |||||||||||||||| |||||| ||| ||||||||| || |||||||||||||| |
|
|
| T |
22898067 |
gatgaaaatccaacatacatactattgtttaaaattggagaaagatctctggtcaatgacaacaaaggttgttttggtttaacaaca |
22898153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 347 - 466
Target Start/End: Original strand, 22885559 - 22885675
Alignment:
| Q |
347 |
tccactggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaaca |
446 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22885559 |
tccactggaaagggataaattcctgaatc---cataatcatcataatatcctgcaggagttgaattagctgatttcaaatcattgatatcaataccaata |
22885655 |
T |
|
| Q |
447 |
tggttatcattgatatcatc |
466 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
22885656 |
tggttatcattgatttcatc |
22885675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 22825959 - 22826139
Alignment:
| Q |
71 |
aggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatataattgaccctgttgaagatgag |
170 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||||||||| ||||||||| |||| ||||| ||||||||||| | || ||| || || | |||||| |
|
|
| T |
22825959 |
aggaagttcagaaattacaagattttgagcttgaccattaagcttaaaacttcaaccaagaatataatgagaagtgaaaactgaaccagtagctgatgag |
22826058 |
T |
|
| Q |
171 |
aatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaaca |
251 |
Q |
| |
|
|||||||||||||||||||| | | |||||||| ||||||| |||||| ||| ||||||||| || |||||||||||||| |
|
|
| T |
22826059 |
aatccaacatacatactattgttcaaaattggaggaagatctctggtcaatgaaaacaaaggttgttttggtttaacaaca |
22826139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 281 - 453
Target Start/End: Original strand, 22805205 - 22805377
Alignment:
| Q |
281 |
tggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtccactggtaagggataaattcctgaatcgacca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| || | |||| | ||||| |
|
|
| T |
22805205 |
tggagctaaagtaacatcaatctttttcttcactccatcataatcaatccatacctgtataggatttccactggaaaggtctactgttctgatttgacca |
22805304 |
T |
|
| Q |
381 |
gtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatggttat |
453 |
Q |
| |
|
|||||| ||||| ||||| |||||| | ||||||||| ||||||||||| ||||||| | ||||||| |
|
|
| T |
22805305 |
tgatcatcgtaataggctgcagtagttgagacaactgatttcagatcattgatattaataccatcgtggttat |
22805377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 22913557 - 22913605
Alignment:
| Q |
277 |
taattggagctaaagtaacatcaatctttttcttcactccatcatattc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913557 |
taattggagctaaagtaacatcaatctttttcttcactccatcatattc |
22913605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 22826141 - 22826209
Alignment:
| Q |
277 |
taattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||| ||||||| |
|
|
| T |
22826141 |
taattggagctaaagtaacatcaatctttttattttcaccatcatattctatccatacctgcataggat |
22826209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 22913698 - 22913749
Alignment:
| Q |
415 |
ctgatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
466 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
22913698 |
ctgatttcaaaccattgatatcaattccaacatggttgtcattgatatcatc |
22913749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 50 - 466
Target Start/End: Complemental strand, 21151034 - 21150633
Alignment:
| Q |
50 |
ctcagcaaatactgttagctcaggaagttcagagattactaggttttgagcttgaccattaaccttaaaactccaactaagaacataatgagaagatata |
149 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| | ||||||||||| | |||||||||||||||||||||| ||||| ||||||||||| | | |
|
|
| T |
21151034 |
ctcagaaaatactgttacttcaggaagttcagagatttcaaggttttgagccaggccattaaccttaaaactccaaccaagaatataatgagaagctgca |
21150935 |
T |
|
| Q |
150 |
attgaccctgttgaagatgagaatccaacatacatactattttgaagaattggagaaagatctttggtcattgataacaaaggtcgtgttggtttaacaa |
249 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
21150934 |
agtaaccctgttgaagatgagaatccaacatacatactattgttgagaactggagaaagatctttggtcaatgataacaaaggtcttgctggtttt---- |
21150839 |
T |
|
| Q |
250 |
caaataaaccataataataatcaatactaattggagctaaagtaacatcaatctttttcttcactccatcatattcaatccatacctgtataggatgtcc |
349 |
Q |
| |
|
| || | || ||| ||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||| || ||||||| ||| |
|
|
| T |
21150838 |
-----------ttattaaaaccaacactaattggagctaaagtaacattaatcttcttcttttcaccatcatattcaatccatacatgcataggatatcc |
21150750 |
T |
|
| Q |
350 |
actggtaagggataaattcctgaatcgaccagtatcatcataatatcctgcatgagttgaattagctgatttcaaatcattgatatcaataccaacatgg |
449 |
Q |
| |
|
|||| ||||||||||| |||||| | || ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21150749 |
actgaaaagggataaatcattgaatccatcattatcatcataatagcctgcagaagttgagttagctgatttcaaatcattgatatcaataccaacatgg |
21150650 |
T |
|
| Q |
450 |
ttatcattgatatcatc |
466 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
21150649 |
ttattattgatatcatc |
21150633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 15628278 - 15628327
Alignment:
| Q |
417 |
gatttcaaatcattgatatcaataccaacatggttatcattgatatcatc |
466 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
15628278 |
gatttcaaaccattgatgtctataccaacatggttatcattaatatcatc |
15628327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University