View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10616_low_14 (Length: 292)

Name: NF10616_low_14
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10616_low_14
NF10616_low_14
[»] chr5 (1 HSPs)
chr5 (13-292)||(11459876-11460155)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 11460155 - 11459876
Alignment:
Q  13 aattcaaccaatcaatgacagagtttatttccctaaatggtatattagtggtggcagaagcaatccaagaagctctgcaaattttgttggaaaatttgtt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11460155 aattcaaccaatcaatgacagagtttatttccctaaatggtatattagtggtggcagaagcaatccaagaagctctgcaaattttgttggaaaatttgtt 11460056  T
Q  113 aatcttaatttcaagacttatttgacttttcttaattggatgcctcaagctttgagaatgagtgagactgaaattattaatcatgctggtcttgattctg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11460055 aatcttaatttcaagacttatttgacttttcttaattggatgcctcaagctttgagaatgagtgagactgaaattattaatcatgctggtcttgattctg 11459956  T
Q  213 ctgtttttctcagaatttatactcttgggtaatcttcttttatctcttttgtaatttatttcccataaagttttgatttt 292  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11459955 ctgtttttctcagaatttacactcttgggtaatcttcttttatctcttttgtaatttatttaccataaagttttgatttt 11459876  T

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