View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10616_low_17 (Length: 251)

Name: NF10616_low_17
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10616_low_17
NF10616_low_17
[»] chr2 (4 HSPs)
chr2 (1-206)||(10366199-10366404)
chr2 (205-242)||(16413162-16413199)
chr2 (207-240)||(34520606-34520639)
chr2 (212-240)||(17537799-17537827)
[»] chr3 (5 HSPs)
chr3 (205-240)||(14632759-14632794)
chr3 (205-240)||(46413178-46413213)
chr3 (205-240)||(49274711-49274746)
chr3 (212-240)||(34470951-34470979)
chr3 (208-244)||(45099355-45099391)
[»] chr1 (6 HSPs)
chr1 (205-244)||(13284706-13284745)
chr1 (205-240)||(49260570-49260605)
chr1 (205-242)||(35585791-35585828)
chr1 (207-240)||(37779432-37779465)
chr1 (212-240)||(15355675-15355703)
chr1 (212-240)||(35186292-35186320)
[»] chr4 (2 HSPs)
chr4 (207-240)||(51026679-51026712)
chr4 (212-240)||(47873324-47873352)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10366404 - 10366199
Alignment:
Q  1 catccccattcggcacattctcataaaagaaaacttttgagcatatatttttggtaagatcggagctaatctaaatacctcttgtgagagtgcatgaaca 100  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366404 catctccattcagcacattctcataaaagaaaacttttgagcatatatttttggtaagatcggagctaatctaaatacctcttgtgagagtgcatgaaca 10366305  T
Q  101 accgccttatctctctttagtaacatgcaagtaagtcatttgaattattctatcgagacattgaactgaagttctcactaacaattagtgtgaaactcgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |    
T  10366304 accgccttatctctctttagtaacatgcaagtaagtcatttgaattattctatccagacattgaactgaagttctcactaacaattagtgtaaaactcat 10366205  T
Q  201 taactc 206  Q
    ||||||    
T  10366204 taactc 10366199  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 16413199 - 16413162
Alignment:
Q  205 tccgtgtcatgtcatcggtgatttttctttcttcttct 242  Q
    ||||||||||||||| || |||||||||||||||||||    
T  16413199 tccgtgtcatgtcataggcgatttttctttcttcttct 16413162  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 34520639 - 34520606
Alignment:
Q  207 cgtgtcatgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||| |||||||||||||||||    
T  34520639 cgtgtcatgtcatcggcgatttttctttcttctt 34520606  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 17537827 - 17537799
Alignment:
Q  212 catgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||||||||||||||||    
T  17537827 catgtcatcggtgatttttctttcttctt 17537799  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 14632759 - 14632794
Alignment:
Q  205 tccgtgtcatgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||||||||||||| |||||||||    
T  14632759 tccgtgtcatgtcatcggtgatttttatttcttctt 14632794  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 46413213 - 46413178
Alignment:
Q  205 tccgtgtcatgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||| |||||||||||||||||||    
T  46413213 tccgtgtcatgtcatcagtgatttttctttcttctt 46413178  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 49274711 - 49274746
Alignment:
Q  205 tccgtgtcatgtcatcggtgatttttctttcttctt 240  Q
    |||||| |||||||||||||||||||||||||||||    
T  49274711 tccgtgccatgtcatcggtgatttttctttcttctt 49274746  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 34470979 - 34470951
Alignment:
Q  212 catgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||||||||||||||||    
T  34470979 catgtcatcggtgatttttctttcttctt 34470951  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 45099391 - 45099355
Alignment:
Q  208 gtgtcatgtcatcggtgatttttctttcttcttctca 244  Q
    |||||||||||| |||||||||||||| |||||||||    
T  45099391 gtgtcatgtcataggtgatttttctttgttcttctca 45099355  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 13284706 - 13284745
Alignment:
Q  205 tccgtgtcatgtcatcggtgatttttctttcttcttctca 244  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  13284706 tccgtgtcatgtcataggcgatttttctttcttcttctca 13284745  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 49260605 - 49260570
Alignment:
Q  205 tccgtgtcatgtcatcggtgatttttctttcttctt 240  Q
    |||||| |||||||||||||||||||||||||||||    
T  49260605 tccgtgccatgtcatcggtgatttttctttcttctt 49260570  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 35585828 - 35585791
Alignment:
Q  205 tccgtgtcatgtcatcggtgatttttctttcttcttct 242  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  35585828 tccgtgccatgccatcggtgatttttctttcttcttct 35585791  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 37779432 - 37779465
Alignment:
Q  207 cgtgtcatgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||| |||||||||||||||||    
T  37779432 cgtgtcatgtcatcggcgatttttctttcttctt 37779465  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 15355703 - 15355675
Alignment:
Q  212 catgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||||||||||||||||    
T  15355703 catgtcatcggtgatttttctttcttctt 15355675  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 35186292 - 35186320
Alignment:
Q  212 catgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||||||||||||||||    
T  35186292 catgtcatcggtgatttttctttcttctt 35186320  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 51026712 - 51026679
Alignment:
Q  207 cgtgtcatgtcatcggtgatttttctttcttctt 240  Q
    |||| |||||||||||||||||||||||||||||    
T  51026712 cgtgccatgtcatcggtgatttttctttcttctt 51026679  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 47873324 - 47873352
Alignment:
Q  212 catgtcatcggtgatttttctttcttctt 240  Q
    |||||||||||||||||||||||||||||    
T  47873324 catgtcatcggtgatttttctttcttctt 47873352  T

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