View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10616_low_18 (Length: 247)

Name: NF10616_low_18
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10616_low_18
NF10616_low_18
[»] chr8 (3 HSPs)
chr8 (18-237)||(1846486-1846705)
chr8 (115-156)||(4297560-4297601)
chr8 (115-168)||(4619755-4619808)
[»] chr1 (11 HSPs)
chr1 (18-237)||(7891016-7891235)
chr1 (18-205)||(7888751-7888938)
chr1 (115-237)||(38138021-38138143)
chr1 (115-237)||(3300731-3300853)
chr1 (115-205)||(45983863-45983953)
chr1 (115-237)||(43044997-43045119)
chr1 (115-237)||(43066872-43066994)
chr1 (115-237)||(43083841-43083963)
chr1 (115-166)||(50912450-50912501)
chr1 (42-116)||(40034688-40034762)
chr1 (115-168)||(40034854-40034907)
[»] chr2 (4 HSPs)
chr2 (115-168)||(34690912-34690965)
chr2 (115-168)||(34713324-34713377)
chr2 (115-168)||(16232253-16232306)
chr2 (18-107)||(33861060-33861149)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 1846705 - 1846486
Alignment:
Q  18 ggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846705 ggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaaga 1846606  T
Q  118 tggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846605 tggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaaaat 1846506  T
Q  218 tccttttatccctatctctg 237  Q
    ||||||||||||||||||||    
T  1846505 tccttttatccctatctctg 1846486  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 4297601 - 4297560
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatg 156  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  4297601 agatggatgccactacacccaaatactccatggataggtatg 4297560  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 4619808 - 4619755
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 168  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||    
T  4619808 agatggatgccactgcacccaaatactccaagtataggtatgaagaatttgtga 4619755  T

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Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 7891016 - 7891235
Alignment:
Q  18 ggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaaga 117  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||    
T  7891016 ggttttgacgctggtttttgtaagaatggtcagaccactgaacatgttcaacttgcattcgctcttggtgtttcacaaatgatctgctgttgtaacaaga 7891115  T
Q  118 tggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  7891116 tggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagtgaggttggctataacctaggtaaaat 7891215  T
Q  218 tccttttatccctatctctg 237  Q
    ||||||||||||||||||||    
T  7891216 tccttttatccctatctctg 7891235  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 7888751 - 7888938
Alignment:
Q  18 ggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaaga 117  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||| ||||||| | |||||||||||||||| |||||||    
T  7888751 ggttttgaagccggtttttgtaaggatggtcagaccactgaacatgttcaacttgccttcgctctcggtgtttaaaaaatgatctgctgctgcaacaaga 7888850  T
Q  118 tggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataa 205  Q
    |||||||||||||||||| ||||||| |||| ||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||    
T  7888851 tggatgccactacacccatatactcctaggacaggtatgaagaaattgtgaatcaagtttcaccctttttgagagaggttggctataa 7888938  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 38138021 - 38138143
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||  || ||||||||||||| || | |    
T  38138021 agatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagatga 38138120  T
Q  215 aattccttttatccctatctctg 237  Q
    |||||| ||| | || |||||||    
T  38138121 aattccatttgttcccatctctg 38138143  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 3300853 - 3300731
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 214  Q
    ||||||||||||||||||| || ||||| |||| |||||||||| |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  3300853 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 3300754  T
Q  215 aattccttttatccctatctctg 237  Q
    |||||| ||| | || |||||||    
T  3300753 aattccatttgttcccatctctg 3300731  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 45983863 - 45983953
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataa 205  Q
    ||||||||||||||||||| |||||||| | ||||||||||| | |||||||||| ||| ||| ||||| |||||   |||||||||||||    
T  45983863 agatggatgccactacacctaaatactctagggataggtatgtagaaattgtgaggcaagttttaccctgtttgaataaggttggctataa 45983953  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 43045119 - 43044997
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 214  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43045119 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43045020  T
Q  215 aattccttttatccctatctctg 237  Q
    |||||| ||| | || |||||||    
T  43045019 aattccatttgttcccatctctg 43044997  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 43066872 - 43066994
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 214  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43066872 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43066971  T
Q  215 aattccttttatccctatctctg 237  Q
    |||||| ||| | || |||||||    
T  43066972 aattccatttgttcccatctctg 43066994  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 43083963 - 43083841
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 214  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43083963 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43083864  T
Q  215 aattccttttatccctatctctg 237  Q
    |||||| ||| | || |||||||    
T  43083863 aattccatttgttcccatctctg 43083841  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 50912501 - 50912450
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgt 166  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| |||||||    
T  50912501 agatggatgctactactcccaaatactccaagggtaggtatgaagaaattgt 50912450  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 40034688 - 40034762
Alignment:
Q  42 aatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaag 116  Q
    ||||||||||||| |||||||| ||  ||||||||  ||||||||||    ||||||||||||||||| ||||||    
T  40034688 aatggtcagaccactgaacatgctcttcttgcctatactcttggtgtgaatcaaatgatctgctgctgcaacaag 40034762  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 40034854 - 40034907
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 168  Q
    |||||||||| ||||||||||||||||| |||| ||||| |||| || ||||||    
T  40034854 agatggatgcaactacacccaaatactctaagggtaggtttgaagaacttgtga 40034907  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 34690965 - 34690912
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 168  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34690965 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34690912  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 34713377 - 34713324
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 168  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34713377 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34713324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 16232306 - 16232253
Alignment:
Q  115 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 168  Q
    ||||| ||||||||||||| |||||||||||||| || ||||||  ||||||||    
T  16232306 agatgaatgccactacaccgaaatactccaaggacagatatgaagtaattgtga 16232253  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 33861149 - 33861060
Alignment:
Q  18 ggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgc 107  Q
    |||||||||| |||||||| |||| |||||||||||  ||||||||  |  || |||| | ||||||||||  | |||||||||||||||    
T  33861149 ggttttgaagttggtttttctaagcatggtcagacccgtgaacatgcccttctcgcctgcactcttggtgtgcctcaaatgatctgctgc 33861060  T

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