View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10616_low_20 (Length: 241)

Name: NF10616_low_20
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10616_low_20
NF10616_low_20
[»] chr7 (14 HSPs)
chr7 (3-224)||(22840196-22840417)
chr7 (13-224)||(22876070-22876281)
chr7 (1-213)||(22898405-22898617)
chr7 (1-210)||(22815169-22815378)
chr7 (1-201)||(22805451-22805651)
chr7 (3-210)||(22889436-22889643)
chr7 (1-224)||(22809786-22810009)
chr7 (1-219)||(22894086-22894304)
chr7 (3-201)||(22831175-22831373)
chr7 (18-201)||(22885751-22885932)
chr7 (16-210)||(22880721-22880915)
chr7 (1-224)||(22842294-22842529)
chr7 (20-150)||(22913829-22913959)
chr7 (112-201)||(22858672-22858761)
[»] chr1 (1 HSPs)
chr1 (1-216)||(21150357-21150572)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 22840196 - 22840417
Alignment:
Q  3 tgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaagt 102  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  22840196 tgttggattggttaaagagaccaaggtattgacttggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccactaagagt 22840295  T
Q  103 tggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagct 202  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22840296 tggatatgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaactataggatttggatagaaagct 22840395  T
Q  203 tgtcctttttcatgttttgtat 224  Q
    ||||||||||| ||||||||||    
T  22840396 tgtcctttttcttgttttgtat 22840417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 22876070 - 22876281
Alignment:
Q  13 gttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaagttggatctgaa 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||  |||| || |||||||| |  |    
T  22876070 gttaaagagaccaaggtattgacgtggtagtgagtttggtagcccttttgtaggagaaacaacaaaaacaattccatcaccactaatagttggatattga 22876169  T
Q  113 gattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtccttttt 212  Q
    | | |||||| ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||||||||||| | ||||||||||    
T  22876170 ggtcttatggcaaatacaaaagtagttgagaaagaagacacacttccattggaagtgtttttgaaaactataggatttggatagaaaccatgtccttttt 22876269  T
Q  213 catgttttgtat 224  Q
    ||| || |||||    
T  22876270 catattctgtat 22876281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 22898405 - 22898617
Alignment:
Q  1 attgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaa 100  Q
    ||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| || |    
T  22898405 attgttggatttgttaaagagaccaaggtattgactttgtagtgaatttggtagcccttttgtaggagagacaacaaaaacaattccatggccactaaga 22898504  T
Q  101 gttggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaag 200  Q
    ||||||| |  || | |||||| ||| ||||||||||||||||||||||||||||||||  | |||||||| |||||||| |||||||||||||||||||    
T  22898505 gttggatattgaggtcttatggcaaacacaaaagtagttgagaaagaagaaacacttccattagaagtgttcttgaaaactataggatttggatagaaag 22898604  T
Q  201 cttgtcctttttc 213  Q
    | ||| |||||||    
T  22898605 catgtgctttttc 22898617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 22815169 - 22815378
Alignment:
Q  1 attgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaa 100  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||    
T  22815169 attgttggaatcgttaaagagaccaaggtattgacttggtagtgaatttggtagcccttttgtaggagaaagaacaaaaacaattccttggccactaaaa 22815268  T
Q  101 gttggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaag 200  Q
    | ||||| |  || | |||| | ||| ||||||||||||||||||||||| |||||| |  ||||||||||||||||||| |||||||||||||||||||    
T  22815269 ggtggatattgaggtcttattgcaaacacaaaagtagttgagaaagaagacacactttcattggaagtgtttttgaaaactataggatttggatagaaag 22815368  T
Q  201 cttgtccttt 210  Q
    | | ||||||    
T  22815369 catatccttt 22815378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 22805451 - 22805651
Alignment:
Q  1 attgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaa 100  Q
    ||||||||| |  |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||  ||||    
T  22805451 attgttggaatcattaaagagaccaaggtattgatttggtagtgaatttggtagcccttttgttggagaaagaacaaaaacaattccatggccagtaaaa 22805550  T
Q  101 gttggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaag 200  Q
    | ||||| |  || | |||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||||||    
T  22805551 ggtggatattgaggtattatggcaaatacaaaagtagttgagaaagaagacacactttcactggaagtgtttttgaaaactattggatttggatagaaag 22805650  T
Q  201 c 201  Q
    |    
T  22805651 c 22805651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 22889436 - 22889643
Alignment:
Q  3 tgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaagt 102  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| | |    
T  22889436 tgttggaatcgttaaagagaccaaggtattgacttggtagtgaatctggtagcccttttgttggagaaataacaaaaacaattccatggccaccaatatt 22889535  T
Q  103 tggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagct 202  Q
    || || |  || | |||||| ||||| ||||||||||||||||||||| || ||| | |||||||||||||||||||| || ||||||||||||||| |     
T  22889536 tgcatattgaggtattatggcaaataaaaaagtagttgagaaagaagacacgctttcactggaagtgtttttgaaaactattggatttggatagaaacca 22889635  T
Q  203 tgtccttt 210  Q
    ||||||||    
T  22889636 tgtccttt 22889643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22809786 - 22810009
Alignment:
Q  1 attgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaa 100  Q
    ||||||||| ||||||||||||||||| ||||||| || |  ||||||||| |||||||||||||| |||| ||| || ||||||||||||  || || |    
T  22809786 attgttggattggttaaagagaccaagatattgacttgcttttgaatttggcagcccttttgtaggtgaaacaacaaatacaattccatgggaactaaga 22809885  T
Q  101 gttggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaag 200  Q
    ||||||| |  || | |||||| ||||||||||||||||||||||||||| |||||| | |||  ||||||||||||||| | |||||||||||||||||    
T  22809886 gttggatattgaggtcttatggcaaatacaaaagtagttgagaaagaagatacactttcactgatagtgtttttgaaaactacaggatttggatagaaag 22809985  T
Q  201 cttgtcctttttcatgttttgtat 224  Q
    | |||||||||||||||| |||||    
T  22809986 catgtcctttttcatgttctgtat 22810009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 22894086 - 22894304
Alignment:
Q  1 attgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaa 100  Q
    ||||||||| | || ||||||||||||||||  || | | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||    
T  22894086 attgttggaatcgtcaaagagaccaaggtatgaaccttggagtgaatttggtagcccttttgtaggagaaagaacaaaaacaattccatggccactataa 22894185  T
Q  101 gttggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaag 200  Q
    |||||| ||  |  | |||||| ||||||||||||||||||||| ||||||||||||||  |||||||||| || ||||| ||||| |||||||||||||    
T  22894186 gttggaccttgatgtcttatggcaaatacaaaagtagttgagaatgaagaaacacttccattggaagtgttcttcaaaactatagggtttggatagaaag 22894285  T
Q  201 cttgtcctttttcatgttt 219  Q
    | ||| ||||||| |||||    
T  22894286 catgtgctttttcttgttt 22894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 22831175 - 22831373
Alignment:
Q  3 tgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaagt 102  Q
    ||||||| | |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||     
T  22831175 tgttggagtagttaaagagaccaaagtattgatttggtagtgaatttggtagcccttttgtaggagaaagaacaaaaacaattccatggccactaataga 22831274  T
Q  103 tggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagc 201  Q
    |||||     |||||||||| |||||||||||||||||||||||| || |||||| |  | ||||||||||| ||||| ||| ||||||||||||||||    
T  22831275 tggatacatggattttatggtaaatacaaaagtagttgagaaagatgacacacttgcattcgaagtgtttttaaaaactatatgatttggatagaaagc 22831373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 22885751 - 22885932
Alignment:
Q  18 agagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaagttggatctgaagattt 117  Q
    ||||||||||||||| |  | |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |  |||||||| | |||||||    
T  22885751 agagaccaaggtattaatattgtagtgaatttggtagcccttttgtaggtgaaataacaaaaacaattccatggccactatgagttggatattaagattt 22885850  T
Q  118 tatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagc 201  Q
    ||| | ||||| | || |||||||||||||||| |||||| | |||  ||||||||||||||| ||||||||||||||||||||    
T  22885851 tatagcaaataaagaattagttgagaaagaagacacactttcactg--agtgtttttgaaaactataggatttggatagaaagc 22885932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 22880721 - 22880915
Alignment:
Q  16 aaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaagttggatctgaagat 115  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||| || |||| ||| ||||||| ||||||||||| |  || || ||    ||||    
T  22880721 aaagagaccaaggtatttacttggtagcgaatttggtagcccttttgttggtgaaacaacaaaaacaagtccatggccacaagtagctgtatacctagat 22880820  T
Q  116 tttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtccttt 210  Q
    || |||| ||||||||||||||||||||||||| | |||||| |  ||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  22880821 ttgatggcaaatacaaaagtagttgagaaagaatacacactttcattggaagtgtttttgaaaactataggatttggatagaaagcatatccttt 22880915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22842294 - 22842529
Alignment:
Q  1 attgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaat----aacga--aaacaattccatggcca 94  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||     ||| |  ||||||| || ||||||    
T  22842294 attgttggaattgttaaagagaccaaggtattgacctggtagtgaatttggttgcccttttgtaggtgaaagttgaaacaacaaaacaatcccgtggcca 22842393  T
Q  95 ccaaaagtt------ggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggat 188  Q
    | || ||||      ||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| | || ||||||||||||||||| || || |    
T  22842394 ctaagagttagttctggatctggagattttatggcaaataaaaaagtagttgagaaagaagacacactttcactagaagtgtttttgaaaactattggtt 22842493  T
Q  189 ttggatagaaagcttgtcctttttcatgttttgtat 224  Q
    ||||||| ||||| || ||||| |  ||||||||||    
T  22842494 ttggatataaagcatgacctttgtattgttttgtat 22842529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 22913829 - 22913959
Alignment:
Q  20 agaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaagttggatctgaagatttta 119  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||| || | | |||     ||||||||    
T  22913829 agaccaaggtattgacttggtagtgaatttggtaacccttttgttggagaaagaacaaaaacaattccatggccactaagattaggaaactcagatttta 22913928  T
Q  120 tggaaaatacaaaagtagttgagaaagaaga 150  Q
    ||| ||| ||||||||||| |||||||||||    
T  22913929 tggcaaaaacaaaagtagtagagaaagaaga 22913959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 22858672 - 22858761
Alignment:
Q  112 agattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagc 201  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| || | || ||||||||||||||||| ||||||||||||||||||||    
T  22858672 agattttatggcaaataaaaaagtagttgagaaagaagacacagtttcactagaagtgtttttgaaaactataggatttggatagaaagc 22858761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 21150572 - 21150357
Alignment:
Q  1 attgttggactggttaaagagaccaaggtattgacgtggtagtgaatttggtagcccttttgtaggagaaataacgaaaacaattccatggccaccaaaa 100  Q
    ||||||||| | |||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |    
T  21150572 attgttggaattgttaaagagaccaaggtattgtgttggtagtgaatttggtagctcttttgtaggagaaataacaaaaacaattccatggccaccaaga 21150473  T
Q  101 gttggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaag 200  Q
    ||||||| |  || | |||||| |||||||||||||||||| |||||| | |||||| ||| ||||||||||| |||||| |||||||||||||||||||    
T  21150472 gttggatattgaggtcttatggcaaatacaaaagtagttgaaaaagaaaacacactttcgccggaagtgttttcgaaaactataggatttggatagaaag 21150373  T
Q  201 cttgtcctttttcatg 216  Q
    | || ||| |||||||    
T  21150372 catgccctatttcatg 21150357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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