View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10616_low_21 (Length: 241)
Name: NF10616_low_21
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 10366416 - 10366629
Alignment:
| Q |
4 |
aactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggagaaaatcagaaaat |
103 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10366416 |
aactagataatttcgaattagctctaagaggttggtataatgatgaaatttcagtgtctcctttaccactaaatgaactacatggagaaaatcagaaaat |
10366515 |
T |
|
| Q |
104 |
aacataannnnnnngaagcacacttaccaatggagagtaatttctgttagagtttgaatctctgcatgtaaaacgtttgacaaaccacactatcatagaa |
203 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10366516 |
gacataatttttttgaagcacactcaccaacagagagtaatttccgttagagtttgaatctctgcatgtaaaacgtttgacaaaccacactatcatagaa |
10366615 |
T |
|
| Q |
204 |
accaaattaaaatt |
217 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10366616 |
accaaattaaaatt |
10366629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 15976873 - 15976784
Alignment:
| Q |
1 |
cttaactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggag |
90 |
Q |
| |
|
|||||||| ||||||| |||||||||| | | |||||||||||| || ||| || |||||| ||| || |||| |||||||||||||| |
|
|
| T |
15976873 |
cttaactaaataacttcgaattagctccagggggttggcataatgattaaacctcgatgtctcctttgccgctaactgaactacatggag |
15976784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 37127046 - 37127004
Alignment:
| Q |
8 |
agataactttgaattagctctaagaggttggcataataatgaa |
50 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
37127046 |
agataactttgaattatctctaagaggttagcataatgatgaa |
37127004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University