View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10616_low_26 (Length: 211)
Name: NF10616_low_26
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3221557 - 3221756
Alignment:
| Q |
1 |
aaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaataaaatacgaagccattcgaggatcaccaaaactttcatttc |
100 |
Q |
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| T |
3221557 |
aaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaatgaaatgcgaagccattcgaagatcaccaaaactttcatttc |
3221656 |
T |
|
| Q |
101 |
cagtagtccctctagagcttcctggtccattttcaactataaacttatacctcacacttctttctttgatttcaacaacagaagacttgatgtttttcat |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
3221657 |
cagtagtccctctagagcttcctggtccattgtcaaccacaaacttatatctcacacttctttctttgatttcaccaaccgaagtcttgatgtttttcat |
3221756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 3304045 - 3304121
Alignment:
| Q |
12 |
caattcatctcttggcgactcaaatcccacaacttggttctcttcaataaaatacgaagccattcgaggatcaccaa |
88 |
Q |
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| T |
3304045 |
caattcatttgttggggactcaaatcccacaacttgagtctcttcaatgaaatagggagccattcgagggtcaccaa |
3304121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 3200990 - 3200913
Alignment:
| Q |
7 |
ctaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaataaaatacgaagccattcgaggatca |
84 |
Q |
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| T |
3200990 |
ctaaccaattcatcttttggggactcaaaccccacaacttgagtctcttgaatgaaataaggagccattcgagtatca |
3200913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 3357460 - 3357539
Alignment:
| Q |
9 |
aaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaataaaatacgaagccattcgaggatcaccaa |
88 |
Q |
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| T |
3357460 |
aaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaatgaaataaggagccattcgagggtcaccaa |
3357539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 3721591 - 3721517
Alignment:
| Q |
6 |
actaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaataaaatacgaagccattcgagg |
80 |
Q |
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|||||||||||||| | |||| |||||||| || |||||||| |||||||||| ||||| | |||||||||||| |
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| T |
3721591 |
actaaccaattcatttgttggggactcaaacccaacaacttgagtctcttcaatgaaataaggagccattcgagg |
3721517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 3310711 - 3310765
Alignment:
| Q |
5 |
aactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaat |
59 |
Q |
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|||||| ||||||||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
3310711 |
aactaatcaattcatctcttggagactcaatccccacaacttgagtctcttcaat |
3310765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 41947314 - 41947504
Alignment:
| Q |
10 |
accaattcatctcttggcgactcaaatcccacaacttggttctcttcaataaaatacgaagccattcgaggatcaccaaaactttcatttccagtagtcc |
109 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||| ||| |||| ||||||||||||| |||||||||| | |||| || ||||||||| |
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| T |
41947314 |
accaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatcaccaaaccattcactttcagtagtcc |
41947413 |
T |
|
| Q |
110 |
ctctagagcttcctggtccattttcaactataaacttatacctcacacttctttctttgatttcaacaacagaagacttgatgtttttcat |
200 |
Q |
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|| ||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
41947414 |
ctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactactttctttgatttcaccaaccgaagacttgatgtatttcat |
41947504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 49386520 - 49386720
Alignment:
| Q |
1 |
aaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaataaaatacgaagccattcgaggatcaccaaaactttcatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| | ||| ||||| ||||||||| |
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| T |
49386520 |
aaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaatgaattgtgaagccattcgaaggtcaacaaaattttcatttc |
49386619 |
T |
|
| Q |
101 |
cagtagtccctctagagcttcctggtccattttcaactataaacttatacctcacacttctttctttgatttcaacaacagaagac-ttgatgtttttca |
199 |
Q |
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||||||||||| |||| |||||| || |||||||| |||| ||||| ||| |||||||||||||||||||| |||| ||| || || |||||||||| |
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| T |
49386620 |
cagtagtccctttagaacttccttgtacattttcattcgtaaatttatagctcgcacttctttctttgatttcaccaaccgaatacttttatgtttttca |
49386719 |
T |
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| Q |
200 |
t |
200 |
Q |
| |
|
| |
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|
| T |
49386720 |
t |
49386720 |
T |
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