View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10616_low_3 (Length: 442)
Name: NF10616_low_3
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 30545663 - 30545259
Alignment:
| Q |
1 |
gcggtttgacagtattatattttattttatcttctttnnnnnnnnngtaattacggaagttatagagaaaaagaacttcacttgatgggtttatagataa |
100 |
Q |
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||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30545663 |
gcggtttgacagtattaaattttattttgtcttctttaaaaaaaaagtaattacggaagttatagagaaaaagaacttcacttgatgggtttatagataa |
30545564 |
T |
|
| Q |
101 |
ttcttttttacagagacttcacttgtgaatttattagaaagtttaatcaaatccattggaccatttcaaaattaattagttaaaacaatattaaatatat |
200 |
Q |
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| T |
30545563 |
ttcttttttacagagacttcacttgtgaatttattagaaagtttaatcaaatccattggaccatttcaaaattaattagttaaaacaatattaaatatat |
30545464 |
T |
|
| Q |
201 |
ggttatcgttattttctacctaaaatatgatcaattatccaaaagccccatgtgaacgcatgggaatttaactagttgttcaaatagatagatcttattt |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30545463 |
ggttatcgttattttctacctaaaatatgaacaattatccaaaagccccatgtgaacgcatgggaatttaactagttgttcaaatagatagatcttattt |
30545364 |
T |
|
| Q |
301 |
tgttcactgaccctcaataggaggtgatacctttgtcaccagaaaaaatatattttaattatgggggatttgagctaatgataatcaaattatcaataac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30545363 |
tgttcactgaccctcaataggaggtgatacctttgtcaccagaaaaaatatattttaattatgggggatttgagctaatgataatcaaattatcaataac |
30545264 |
T |
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| Q |
401 |
taata |
405 |
Q |
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||||| |
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| T |
30545263 |
taata |
30545259 |
T |
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