View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10616_low_4 (Length: 412)
Name: NF10616_low_4
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 23967474 - 23967095
Alignment:
| Q |
18 |
gatactagattaactgattcggataactttgtctgaattgagtacgaaattattgcaaagaaaaaaggatcttgggggcttttaagaatgatggtggaga |
117 |
Q |
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| T |
23967474 |
gatactagattaactgattcggataactttgtctgaattgagtacgaaattattgcaaagaaaaaaggatcttgggggcttttaagaatgatggtggaga |
23967375 |
T |
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| Q |
118 |
agaaactatcattattttttattaagaactgaacttgattgcaagcaaattgtaaccctaagagataagattaaatatttattcttattttattttgttc |
217 |
Q |
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| T |
23967374 |
agaaactatcattattttttattaagaactgaacttgattgcaagcaaattgtaaccctaagagataagattaaatatttattcttattttattttgttc |
23967275 |
T |
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| Q |
218 |
caatcttcaacactgtaactcatgtaccagtgtaataaaagataaatgattttttggacttcataaaagctaagctccctccccgaacggtgctgctgat |
317 |
Q |
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| T |
23967274 |
caatcttcaacactgtaattcatgtaccagtgtaataaaagataaatgattttttggacttcataaaagctaagctccctccccgaacggtgctgctgat |
23967175 |
T |
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| Q |
318 |
tgctgatgctccgagtacatgttataccattttgaaatcttaacaannnnnnnggcttgttaaaaataaaacagttgatg |
397 |
Q |
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| T |
23967174 |
tgctgatgctccgagtacatgttataccattttgaaatcttaacaatttttttggcttgttaaaaataaaacagttgatg |
23967095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 253 - 397
Target Start/End: Original strand, 23997122 - 23997259
Alignment:
| Q |
253 |
taaaagataaatgattttttggacttcataaaagctaagctccctccccgaacggtgctgctgattgctgatgctccgagtacatgttataccattttga |
352 |
Q |
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| T |
23997122 |
taaaagataaatgatttcttggacttcataaaagctaagctccctccccgaacggtgc-------tgctgatgctccgagtacatgttatacaattttga |
23997214 |
T |
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| Q |
353 |
aatcttaacaannnnnnnggcttgttaaaaataaaacagttgatg |
397 |
Q |
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| T |
23997215 |
aatcttaacaaatttttaggcttgttaaaaataaaacagttgatg |
23997259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 23997022 - 23997131
Alignment:
| Q |
77 |
gaaaaaaggatcttgggggcttttaagaatg-atggtggagaagaaactatcattattttttattaagaactgaacttgattgcaagcaaattgtaaccc |
175 |
Q |
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| T |
23997022 |
gaaaaaaggatcttgggggcttttaagaatgtatggtggataagaaattatcattattttttattaattactgaacttgattgcaagcaaattgtaaccg |
23997121 |
T |
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| Q |
176 |
taagagataa |
185 |
Q |
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||| |||||| |
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| T |
23997122 |
taaaagataa |
23997131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 23996846 - 23996894
Alignment:
| Q |
27 |
ttaactgattcggataac-tttgtctgaattgagtacgaaattattgca |
74 |
Q |
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| T |
23996846 |
ttaactgattcggataacatttgtctgaattgagtacaaaattattgca |
23996894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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