View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10616_low_9 (Length: 323)
Name: NF10616_low_9
Description: NF10616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10616_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 42833708 - 42834007
Alignment:
| Q |
18 |
attaagaaagtcaagtagtcaattttacgtgttagttaatgttacttattcaactagtggaattttaaaattttattatgtatctcagtttttaaattga |
117 |
Q |
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| T |
42833708 |
attaagaaagtcaagtagtcaattttacgtgttagttaatgttacttattcaactagtggaattttaaaattttattatgtatctcagtttttaaattga |
42833807 |
T |
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| Q |
118 |
ttttctttcatggtgatactttgctatttttgtttatggtagaatttagatttgttttataacctaggaaaacaaatttacatttcaaaattgcaatcca |
217 |
Q |
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| T |
42833808 |
ttttctttcatggtgatactttgctatttttgtttatggtagaatttagatttgttttataacctaggaaaacaaatttaaatttcaaaattgcaatcca |
42833907 |
T |
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| Q |
218 |
aatttacatttcatgtcattatacctatatgttcatgaccttttattatggaatagaaaaattgtacctttttatggnnnnnnnctaacgcattgttctt |
317 |
Q |
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| T |
42833908 |
aatttacatttcatgtcattatatctatatgttcatgaccttttattatggaatagaaaaattgtacctttttatggtttttttctaacgcattgttctt |
42834007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 42833495 - 42833551
Alignment:
| Q |
35 |
gtcaattttacgtgttagttaatgttacttattcaactagtggaattttaaaatttt |
91 |
Q |
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| T |
42833495 |
gtcaattttacgtgttagttaatgttacttattcaaccagtaggattttaaaatttt |
42833551 |
T |
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