View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10617_high_6 (Length: 244)
Name: NF10617_high_6
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_high_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15282715 - 15282944
Alignment:
| Q |
1 |
atgcgatgttgataaataaactaaaacacgtcaaagttaataaacttctattgcttaccacattgaagatttcaagtgacaaagtgtacttcaagtccat |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15282715 |
atgctatgttgataaataaactaaaacacgtcaaagttaataaacttctattgcttaccacattgaagatttcaagtgacaaagtgtacttcaagtccat |
15282814 |
T |
|
| Q |
101 |
cttgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15282815 |
cttgacataaaccagtctttcacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctg |
15282914 |
T |
|
| Q |
201 |
ttgcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
15282915 |
ttgtaaatccaactcccatgcccatataga |
15282944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15463084 - 15463313
Alignment:
| Q |
1 |
atgcgatgttgataaataaactaaaacacgtcaaagttaataaacttctattgcttaccacattgaagatttcaagtgacaaagtgtacttcaagtccat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15463084 |
atgctatgttgataaataaactaaaacacgtcaaagttaataaacttctattgcttaccacattgaagatttcaagtgacaaagtgtacttcaagtccat |
15463183 |
T |
|
| Q |
101 |
cttgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15463184 |
cttgacataaaccagtctttcacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctg |
15463283 |
T |
|
| Q |
201 |
ttgcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
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|
| T |
15463284 |
ttgtaaatccaactcccatgcccatataga |
15463313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 15301255 - 15301465
Alignment:
| Q |
20 |
actaaaacacgtcaaagttaataaacttctattgcttaccacattgaagatttcaagtgacaaagtgtacttcaagtccatcttgacataaaccagtctt |
119 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||| | |||| |||||| ||||||||||||||||||||||||| |
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|
| T |
15301255 |
actaaaacacatcaaaactaataaacttcttttgcttaccacattgaaagtttcaagtgaaatagtgcacttcaggtccatcttgacataaaccagtctt |
15301354 |
T |
|
| Q |
120 |
tgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctgttgcaaatccaactcccat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |
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|
| T |
15301355 |
tgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcatgttgaaaatccaactgccat |
15301454 |
T |
|
| Q |
220 |
gcccatataga |
230 |
Q |
| |
|
||||||||||| |
|
|
| T |
15301455 |
gcccatataga |
15301465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 15481624 - 15481834
Alignment:
| Q |
20 |
actaaaacacgtcaaagttaataaacttctattgcttaccacattgaagatttcaagtgacaaagtgtacttcaagtccatcttgacataaaccagtctt |
119 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||| | |||| |||||| ||||||||||||||||||||||||| |
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|
| T |
15481624 |
actaaaacacatcaaaactaataaacttcttttgcttaccacattgaaagtttcaagtgaaatagtgcacttcaggtccatcttgacataaaccagtctt |
15481723 |
T |
|
| Q |
120 |
tgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctgttgcaaatccaactcccat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |
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|
| T |
15481724 |
tgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcatgttgaaaatccaactgccat |
15481823 |
T |
|
| Q |
220 |
gcccatataga |
230 |
Q |
| |
|
||||||||||| |
|
|
| T |
15481824 |
gcccatataga |
15481834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15444984 - 15445213
Alignment:
| Q |
1 |
atgcgatgttgataaa-taaactaaaacacgtcaaagttaataaacttctattgcttaccacattgaaga-tttcaagtgacaaagtgtacttcaagtcc |
98 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||||||| | |||||||||| |||||| | |||||||||| | | ||||||||| |||| |
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|
| T |
15444984 |
atgcgatgttgataaaataaactaaaacaat--aaaattaataaactggttttgcttaccatattgaaaagtttcaagtgaaacaatgtacttcaggtcc |
15445081 |
T |
|
| Q |
99 |
atcttgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcc |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||| |
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|
| T |
15445082 |
atcttgatataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgacctcttgaataaaagagaaccaaaaactatccagaagcc |
15445181 |
T |
|
| Q |
199 |
tgttgcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15445182 |
tgttgcaaatccaactcccatgcccatataga |
15445213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 15114506 - 15114331
Alignment:
| Q |
55 |
ttaccacattgaagatttcaagtgacaaagtgtacttcaagtccatcttgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctc |
154 |
Q |
| |
|
|||||||||| || |||||||||| | | || |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15114506 |
ttaccacatttaaagtttcaagtgaaagaatgcacttcagttccatcttgacataagccaatctttgacatcataaagaaaattgaagtaagcatgcctc |
15114407 |
T |
|
| Q |
155 |
catgtcctcttaaataaaagggtaccaaaaactatccagaagcctgttgcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
||||||||||| | |||||| | ||||||||| ||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
15114406 |
catgtcctcttgagtaaaagagaaccaaaaacaatccaaaagctgattgcaaatccaactcccatgcccatataga |
15114331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 15312190 - 15312318
Alignment:
| Q |
102 |
ttgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctgt |
201 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| | ||||||||||| |||||||||||| |
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|
| T |
15312190 |
ttgacataaaccagtctttcacatcataaaggaaattgaagtaagcatgtctccatgacctcttgaataaaagagaaccaaaaactacccagaagcctgt |
15312289 |
T |
|
| Q |
202 |
tgcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
15312290 |
tgcaaatccaactcccatacccatataga |
15312318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 15492559 - 15492687
Alignment:
| Q |
102 |
ttgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctgt |
201 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| | ||||||||||| |||||||||||| |
|
|
| T |
15492559 |
ttgacataaaccagtctttcacatcataaaggaaattgaagtaagcatgtctccatgacctcttgaataaaagagaaccaaaaactacccagaagcctgt |
15492658 |
T |
|
| Q |
202 |
tgcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
15492659 |
tgcaaatccaactcccatacccatataga |
15492687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 15280104 - 15280326
Alignment:
| Q |
5 |
gatgttgataaataaactaaaacacgtcaaag-ttaataaacttctattgcttaccacattgaaga-tttcaagtgacaaagtgtacttcaagtccatct |
102 |
Q |
| |
|
||||||||||| ||||||||||||| | ||| |||||||||| |||||||||| |||||| | |||||| ||| | || | |||||| ||||||| |
|
|
| T |
15280104 |
gatgttgataagtaaactaaaacacatgaaaaattaataaactgtatttgcttaccatattgaaaagtttcaactgaaatag-gcacttcagttccatct |
15280202 |
T |
|
| Q |
103 |
tgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctgtt |
202 |
Q |
| |
|
||||||| |||||||||| |||||||| | ||||||||||||||||||| |||||| ||| || |||||||| | |||||||||| ||||||||||| |
|
|
| T |
15280203 |
tgacatataccagtctttcacatcatataaaaaattgaagtaagcatgcttccatgacctgttgaataaaagagaaccaaaaact----agaagcctgtt |
15280298 |
T |
|
| Q |
203 |
gcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15280299 |
gcaaatccaactcccatgcccatataga |
15280326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 15460473 - 15460695
Alignment:
| Q |
5 |
gatgttgataaataaactaaaacacgtcaaag-ttaataaacttctattgcttaccacattgaaga-tttcaagtgacaaagtgtacttcaagtccatct |
102 |
Q |
| |
|
||||||||||| ||||||||||||| | ||| |||||||||| |||||||||| |||||| | |||||| ||| | || | |||||| ||||||| |
|
|
| T |
15460473 |
gatgttgataagtaaactaaaacacatgaaaaattaataaactgtatttgcttaccatattgaaaagtttcaactgaaatag-gcacttcagttccatct |
15460571 |
T |
|
| Q |
103 |
tgacataaaccagtctttgacatcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctgtt |
202 |
Q |
| |
|
||||||| |||||||||| |||||||| | ||||||||||||||||||| |||||| ||| || |||||||| | |||||||||| ||||||||||| |
|
|
| T |
15460572 |
tgacatataccagtctttcacatcatataaaaaattgaagtaagcatgcttccatgacctgttgaataaaagagaaccaaaaact----agaagcctgtt |
15460667 |
T |
|
| Q |
203 |
gcaaatccaactcccatgcccatataga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15460668 |
gcaaatccaactcccatgcccatataga |
15460695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 18050840 - 18050945
Alignment:
| Q |
123 |
catcataaagaaaattgaagtaagcatgcctccatgtcctcttaaataaaagggtaccaaaaactatccagaagcctgttgcaaatccaactcccatgcc |
222 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||| | || |||||||| | || |||||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
18050840 |
catcatcaagaaatttgaagtaattgtgcctccatgttcgattgaataaaagagaacaaaaaacaatcaagaagctgattgcaaatccaactcccatgcc |
18050939 |
T |
|
| Q |
223 |
catata |
228 |
Q |
| |
|
|||||| |
|
|
| T |
18050940 |
catata |
18050945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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