View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10617_low_1 (Length: 450)

Name: NF10617_low_1
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10617_low_1
NF10617_low_1
[»] chr2 (6 HSPs)
chr2 (78-434)||(2628406-2628769)
chr2 (361-408)||(28412348-28412395)
chr2 (357-403)||(23921256-23921302)
chr2 (360-405)||(19573979-19574024)
chr2 (364-405)||(30298464-30298505)
chr2 (360-404)||(41942107-41942151)
[»] chr8 (1 HSPs)
chr8 (362-407)||(7442844-7442889)
[»] chr6 (3 HSPs)
chr6 (360-405)||(1532241-1532286)
chr6 (360-407)||(7569181-7569228)
chr6 (359-405)||(17341676-17341722)
[»] chr5 (2 HSPs)
chr5 (360-408)||(5467991-5468039)
chr5 (357-405)||(27932236-27932284)
[»] chr4 (3 HSPs)
chr4 (361-407)||(16189708-16189754)
chr4 (356-405)||(8423727-8423776)
chr4 (360-405)||(24343508-24343553)
[»] scaffold0123 (1 HSPs)
scaffold0123 (360-405)||(44538-44583)
[»] chr3 (1 HSPs)
chr3 (359-407)||(14840303-14840351)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 78 - 434
Target Start/End: Complemental strand, 2628769 - 2628406
Alignment:
Q  78 ggacgcgaatttgtggccacgagtata--cataaaataaaactagaactagaattggtagaaggctttctcattagcacatgtgttttgtacaccttgct 175  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2628769 ggacgcgaatttgtggccacgagtatatacataaaataaaactagaactagaattggtagaaggctttctcattagcacatgtgttttgtacaccttgct 2628670  T
Q  176 ttatttgttgatttaatcaaaagtggggagtgttgtgttgtgttgttggtaagcttgttgagtcaaccccaatggattgaatcctcttacaagactctag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2628669 ttatttgttgatttaatcaaaagtggggagtgttgtgttgtgttgttggtaagcttgttgagtcaaccccaatggattggatcctcttacaagactctag 2628570  T
Q  276 atgatctatgatctatccgatatgcacatatattctttagattagacgtgtcctaatgttgaacatgt-----gtcggacacatgcatttataattacac 370  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| ||||||| | |||||||||||||     ||||||||||||||||||||||||||     
T  2628569 atgatctatgatctattcgatatgcatatatattctttagattaaacgtgtcttgatgttgaacatgtgtcgtgtcggacacatgcatttataattacat 2628470  T
Q  371 tgaattatgtaattttatgaaatttttatcggtgttgatatatttatgtcaatgtcgtgtttgt 434  Q
    |||||||| ||||||||||||||||||||   ||| ||||||| ||||||| ||||||||||||    
T  2628469 tgaattatataattttatgaaatttttatgaatgtcgatatatctatgtcagtgtcgtgtttgt 2628406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 408
Target Start/End: Complemental strand, 28412395 - 28412348
Alignment:
Q  361 ataattacactgaattatgtaattttatgaaatttttatcggtgttga 408  Q
    |||||||||||||||||||| ||||||| ||||| ||| |||||||||    
T  28412395 ataattacactgaattatgtgattttatcaaattattaacggtgttga 28412348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 23921302 - 23921256
Alignment:
Q  357 atttataattacactgaattatgtaattttatgaaatttttatcggt 403  Q
    |||||||||||||||||||||||||||||| | ||||| ||| ||||    
T  23921302 atttataattacactgaattatgtaattttctcaaattattaacggt 23921256  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 19574024 - 19573979
Alignment:
Q  360 tataattacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    ||||||||||||||||||||| ||||| | ||||| ||||||||||    
T  19574024 tataattacactgaattatgttattttcttaaattattatcggtgt 19573979  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 30298464 - 30298505
Alignment:
Q  364 attacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||    
T  30298464 attacactgaattatgtcattttattaaattattatcggtgt 30298505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 41942151 - 41942107
Alignment:
Q  360 tataattacactgaattatgtaattttatgaaatttttatcggtg 404  Q
    |||||||| |||||||||||||||||| | ||||||||| |||||    
T  41942151 tataattatactgaattatgtaattttctcaaatttttaacggtg 41942107  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 7442889 - 7442844
Alignment:
Q  362 taattacactgaattatgtaattttatgaaatttttatcggtgttg 407  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  7442889 taattacactgaattatgtaattttatgaaattattagcggtgttg 7442844  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 1532286 - 1532241
Alignment:
Q  360 tataattacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  1532286 tataattacactgaattatgtaattttatcaaattattagcggtgt 1532241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 7569181 - 7569228
Alignment:
Q  360 tataattacactgaattatgtaattttatgaaatttttatcggtgttg 407  Q
    ||||||||||||||||||||||||||| | ||||| ||||| ||||||    
T  7569181 tataattacactgaattatgtaattttctcaaattattatctgtgttg 7569228  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 405
Target Start/End: Original strand, 17341676 - 17341722
Alignment:
Q  359 ttataattacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    |||||||||||||||||||||| ||||||| ||||| ||| ||||||    
T  17341676 ttataattacactgaattatgtgattttatcaaattattaacggtgt 17341722  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 5467991 - 5468039
Alignment:
Q  360 tataattacactgaattatgtaattttatgaaatttttatcggtgttga 408  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||| ||||    
T  5467991 tataattacactgaattatgtgattttatcaaattattatcggtattga 5468039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 27932284 - 27932236
Alignment:
Q  357 atttataattacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    |||| ||||||||||||||||||||||||| | ||||| ||| ||||||    
T  27932284 atttgtaattacactgaattatgtaattttctcaaattattagcggtgt 27932236  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 16189754 - 16189708
Alignment:
Q  361 ataattacactgaattatgtaattttatgaaatttttatcggtgttg 407  Q
    |||||||||||||||||||| ||||| | ||||||||| ||||||||    
T  16189754 ataattacactgaattatgtgattttctcaaatttttagcggtgttg 16189708  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 8423727 - 8423776
Alignment:
Q  356 catttataattacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    ||||||||||||||||||||||||| ||||| | ||||| ||| ||||||    
T  8423727 catttataattacactgaattatgtgattttctcaaattattagcggtgt 8423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 24343553 - 24343508
Alignment:
Q  360 tataattacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    ||||||||||||||||||||||||||| | ||||| ||||| ||||    
T  24343553 tataattacactgaattatgtaattttctcaaattattatccgtgt 24343508  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 44538 - 44583
Alignment:
Q  360 tataattacactgaattatgtaattttatgaaatttttatcggtgt 405  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||||||    
T  44538 tataattacactgaattatgtgattttctcaaatttttagcggtgt 44583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 14840303 - 14840351
Alignment:
Q  359 ttataattacactgaattatgtaattttatgaaatttttatcggtgttg 407  Q
    |||||||||||||||||||||| ||||| ||||||| |||  |||||||    
T  14840303 ttataattacactgaattatgtgattttctgaaattattaatggtgttg 14840351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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