View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_11 (Length: 249)
Name: NF10617_low_11
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 45483568 - 45483742
Alignment:
| Q |
22 |
atgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatgagctttgatatcataaaatc |
121 |
Q |
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| T |
45483568 |
atgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatgagctttgatatcataaaatc |
45483667 |
T |
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| Q |
122 |
acgtgcactataaaaagtgtcatctaatcattcatattttattctttacccgtatagctagcttatggagcataa |
196 |
Q |
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| T |
45483668 |
acgtgcactataaaaagtgtcatctaattattcatattttattctttacccgtatagctagcttatggagcataa |
45483742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 29502161 - 29502232
Alignment:
| Q |
22 |
atgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatccta |
93 |
Q |
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| T |
29502161 |
atgctagctccaaagataggttcaaaagggagcttgatgggatacaagttgagttgcaagctactgatccta |
29502232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 40864875 - 40864800
Alignment:
| Q |
31 |
ccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatgagctt |
106 |
Q |
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| T |
40864875 |
ccaaggatagattcaagagagaattggatggcattcaagttgaactgcaagcaactgatccaagtgagatgagctt |
40864800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 36529063 - 36528992
Alignment:
| Q |
22 |
atgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatccta |
93 |
Q |
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| T |
36529063 |
atgcaagctccaaagatagattcaagagagagcttgatggtattcagattgagttgcaagcaactgatccta |
36528992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 2791121 - 2791194
Alignment:
| Q |
33 |
aaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatgagctt |
106 |
Q |
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| T |
2791121 |
aaggatagattcaagagggagttggatggcattcaagttgaactccaagcaactgatccaagtgagatgagctt |
2791194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 10635497 - 10635576
Alignment:
| Q |
22 |
atgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatg |
101 |
Q |
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| T |
10635497 |
atgcaagcaccaaagaaaggttcaagagggagctggatggaattcaaatagagttgcaggcaactgatcctactgaaatg |
10635576 |
T |
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