View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_16 (Length: 221)
Name: NF10617_low_16
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 11642518 - 11642328
Alignment:
| Q |
12 |
agatgaacacaaaaaagcaccatcttctttcctcatttttctaatgcctagctttctaagttgagtgagtcttcctaactctaccatcaatgctccactt |
111 |
Q |
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| T |
11642518 |
agatgaacacaaagcagcaccatcttctttcctcatttttctaatgcctagctttctaagttgagtgagtcttcctaactctaccatcaatgctccactt |
11642419 |
T |
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| Q |
112 |
ccttgatctacatctacgaaacaaagcttttgcaaagattgcatgtttcctataggtgcagccaccttgaagccattctttgagtggaaat |
202 |
Q |
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| T |
11642418 |
ccttgatctacatctacgaaacaaagcttttgcaaagattgcatgtttcctataggtgcagccaccttgaagccattctttgagtggaaat |
11642328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 11624012 - 11623822
Alignment:
| Q |
12 |
agatgaacacaaaaaagcaccatcttctttcctcatttttctaatgcctagctttctaagttgagtgagtcttcctaactctaccatcaatgctccactt |
111 |
Q |
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||||||||||||| |||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
11624012 |
agatgaacacaaagcagcaccgtcttctttcctcatttttcttatgcctagcctcctaagttgagtgagttttcctaactctaccatcaaggctctgctt |
11623913 |
T |
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| Q |
112 |
ccttgatctacatctacgaaacaaagcttttgcaaagattgcatgtttcctataggtgcagccaccttgaagccattctttgagtggaaat |
202 |
Q |
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| T |
11623912 |
ccttgatctacctctatgaaacaaagcttttgcaatgatagcatgtttcctataggtgcagccaccttgaagccatgccttgagtggaaat |
11623822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 11603438 - 11603625
Alignment:
| Q |
13 |
gatgaacacaaaaaagcaccatcttctttcctcatttttctaatgcctagctttctaagttgagtgagtcttcctaactctaccatcaatgctccacttc |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||| |||||| ||| |||||||| ||| |||||| |
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| T |
11603438 |
gatgaacacaaagcagcaccatcttctttcctcatttttcttatgcctagcctcctaagttgagtaagttttcctagctcaaccatcaaggctgcacttc |
11603537 |
T |
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| Q |
113 |
cttgatctacatctacgaaacaaagcttttgcaaagattgcatgtttcctataggtgcagccaccttgaagccattctttgagtggaa |
200 |
Q |
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|||||||||| |||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
11603538 |
cttgatctacctctatgaaacaaagcttctgcaatgatagcatgtttcctataggtgcagccaccttgaagccatgccttgagtggaa |
11603625 |
T |
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