View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_2 (Length: 415)
Name: NF10617_low_2
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 4736431 - 4736574
Alignment:
| Q |
15 |
gggtgagaaaggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcctactatatagtactac |
114 |
Q |
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| T |
4736431 |
gggtgagaaaggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcctactatatagtactac |
4736530 |
T |
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| Q |
115 |
tttttgatgaattttataatatgatgtaataataagaataagtt |
158 |
Q |
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| T |
4736531 |
tttttgatgaattttataatatgatgtaataataagaataagtt |
4736574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 4736557 - 4736708
Alignment:
| Q |
199 |
taataataagaataagtttcctttattgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtacagagtacagacccgtgtg |
298 |
Q |
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| T |
4736557 |
taataataagaataagtttcctttgttgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtagagagtacagacccgtgtg |
4736656 |
T |
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| Q |
299 |
attcgtcctagctaaattctacccacaacgatcatattttgtgccctaaaaa |
350 |
Q |
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| T |
4736657 |
attcgtcctagctaaattctacccacaacgatcatattttgtgccctaaaaa |
4736708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 4744950 - 4745025
Alignment:
| Q |
23 |
aaggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcc |
98 |
Q |
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| T |
4744950 |
aaggctacatgaagttgttgagggaaagtggtgaaccaggaggtcaatgtggcattgctgcacatgcttcttatcc |
4745025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 370
Target Start/End: Original strand, 4738475 - 4738503
Alignment:
| Q |
342 |
ccctaaaaaggtcatttgtcaagaactat |
370 |
Q |
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| T |
4738475 |
ccctaaaaaggtcatttgtcaagaactat |
4738503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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