View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_3 (Length: 315)
Name: NF10617_low_3
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 149935 - 150231
Alignment:
| Q |
1 |
caacaacaccttcaccttcaaatctacctcaacaacaacctcaaacaacacctttagctgcttcttcatcagagacaacttcatcacaatctcatgatca |
100 |
Q |
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| T |
149935 |
caacaacaccttcaccttcaaatctacctcaacaacaacctcaaacaacacctttagctgcttcttcatcagagacaacttcatcacaatctcatgatca |
150034 |
T |
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| Q |
101 |
ttcaccaatgccttgtcaagaaggaaataggttacaagagttagaccaacaagttcatcaacaactaagaaaagggaaatatgtaagtcctgtttggaaa |
200 |
Q |
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| T |
150035 |
ttcaccaatgccttgtcaagaaggaaataggttacaagagttagaacaacaagttcatcaacaactaagaaaagggaaatatgtaagtcctgtttggaaa |
150134 |
T |
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| Q |
201 |
cctaatgaaatgctatggttagcaagagcatggaaagaacaataccaaacaagctcagaaacatcttcaagaactgaacaagagatgggaatgagta |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150135 |
cctaatgaaatgctatggttagcaagagcatggaaagaacaataccaaacaagctcagaaacatcttcaagaactgaacaagagatgggaatgagta |
150231 |
T |
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