View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_4 (Length: 311)
Name: NF10617_low_4
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 43474207 - 43474409
Alignment:
| Q |
18 |
aaaggctattttaagggagaatggttggacaaattggtagcattctcacaattcttgcatgagcacgacaatgataagtattgtggtgccaaaggaactg |
117 |
Q |
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| T |
43474207 |
aaaggctattttaagggagaatggttggacaaattggtagaattctcacaattcttgcatgagcacgacaatgataagtatcgtggtgccaaaggaactg |
43474306 |
T |
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| Q |
118 |
tctcacgactagagtttaaagagaaatatttgattgattggtacatgactgtcttggagctccaggaccaaccgaatttttctgatgagatatttgagga |
217 |
Q |
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| T |
43474307 |
tctcgcgactagagtttaaagagaaatacttgattgattggtacatgactgtcttggagctccaggaccaaccggatttttctgatgagatatttgagga |
43474406 |
T |
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| Q |
218 |
gga |
220 |
Q |
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||| |
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| T |
43474407 |
gga |
43474409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 43572882 - 43572680
Alignment:
| Q |
18 |
aaaggctattttaagggagaatggttggacaaattggtagcattctcacaattcttgcatgagcacgacaatgataagtattgtggtgccaaaggaactg |
117 |
Q |
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| T |
43572882 |
aaaggctattttatgggagaatggttagatgaactggaggcattctcaacattcttgcatgagcacaacaatgataagtattgcggcaacaaaggaactg |
43572783 |
T |
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| Q |
118 |
tctcacgactagagtttaaagagaaatatttgattgattggtacatgactgtcttggagctccaggaccaaccgaatttttctgatgagatatttgagga |
217 |
Q |
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| T |
43572782 |
tctctcgactagagtttaaacagaaatatttgattgattggtacatcactgtcttggagctccaggatcgaccgaatttttctgatgagatatttgagga |
43572683 |
T |
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| Q |
218 |
gga |
220 |
Q |
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||| |
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| T |
43572682 |
gga |
43572680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 43566040 - 43565838
Alignment:
| Q |
18 |
aaaggctattttaagggagaatggttggacaaattggtagcattctcacaattcttgcatgagcacgacaatgataagtattgtggtgccaaaggaactg |
117 |
Q |
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|||||||||| ||||||||||||||| || || ||| ||||||||||||||| ||||| ||||||||||||| |||||| | || ||||||||||| |
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| T |
43566040 |
aaaggctattgtaagggagaatggttagatgaactggaggcattctcacaattcctgcatcagcacgacaatgacaagtatcgcggcaacaaaggaactg |
43565941 |
T |
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| Q |
118 |
tctcacgactagagtttaaagagaaatatttgattgattggtacatgactgtcttggagctccaggaccaaccgaatttttctgatgagatatttgagga |
217 |
Q |
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| T |
43565940 |
tctcgcgactagagtttaaattgaaatatttgatggattggtacaacagtgtcttggagcttcaggaccaaccaaatttctctgatgagatatttgagga |
43565841 |
T |
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| Q |
218 |
gga |
220 |
Q |
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||| |
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| T |
43565840 |
gga |
43565838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 43474451 - 43474537
Alignment:
| Q |
217 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactagcttcttttgagttcgtcatttcttctc |
303 |
Q |
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| T |
43474451 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactaacttcttttgagttcgacatttcttctc |
43474537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 43565796 - 43565710
Alignment:
| Q |
217 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactagcttcttttgagttcgtcatttcttctc |
303 |
Q |
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| T |
43565796 |
aggatattaaggctcagattatggaggttaacaatgctttaaagctcagaaccgaactagcttcgtttgagttcgacatttcttctc |
43565710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 43572638 - 43572553
Alignment:
| Q |
217 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactagcttcttttgagttcgtcatttcttct |
302 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
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| T |
43572638 |
aggatattcaggctcagattatggaggttaaaactgctttaaagctcagagccgaactaacttctcttgagttcgacatttcttct |
43572553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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