View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_5 (Length: 307)
Name: NF10617_low_5
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 34349675 - 34349381
Alignment:
| Q |
1 |
ttattttctaacttattttaatagtgtattagtttctaacttataagtctatatgtgagttaactaaatctataagtctacatggacccttgtaaaatgc |
100 |
Q |
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| T |
34349675 |
ttattttctaacttattttaatagtgtattagtttctaacttataagtctatatgtgagttaactaaatctataagtctacatggacccttgtaaaatgc |
34349576 |
T |
|
| Q |
101 |
attgcagatatgaagatgatgcctatggtggcgattctagaatgctagcactgctatctaaggctctccgagatgttggtttgacgattgaatatcgttt |
200 |
Q |
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| T |
34349575 |
attgcagatatgaagatgatgcctatggtggcgattctagaatgctagcactgctatctaaggctctccgagatgttggtttgacaattgaatatcgttt |
34349476 |
T |
|
| Q |
201 |
agctttgctgtcacctacttatctgcctaattcacgaagaactgttgaagttaatcgaaaacacacaatctcgcgtattcgttgtgtaacattcat |
296 |
Q |
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| T |
34349475 |
agctttgctgtcacctacttatctgcctaattcacgaagaactgtttaagttaatcaaaaacacacaatctcgcgtattcattgt-taacattcat |
34349381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 34605040 - 34605162
Alignment:
| Q |
109 |
tatgaagatgatgcctatggtggcgattctagaatgctagcactgctatctaaggctctccgagatgttggtttgacgattgaatatcgtttagctttgc |
208 |
Q |
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| T |
34605040 |
tatgaagatgatgcatatggtggtgagtctgggatgctagcacttctatccgaggccctccaagagattggttcaatgattgaatatcgtttagctttgc |
34605139 |
T |
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| Q |
209 |
tgtcacctacttatctgcctaat |
231 |
Q |
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|||| ||||||| || ||||| |
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| T |
34605140 |
catcacttacttatatgtctaat |
34605162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 34349708 - 34349676
Alignment:
| Q |
25 |
tgtattagtttctaacttataagtctatatgtg |
57 |
Q |
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| T |
34349708 |
tgtattagtttctaacttataagtctatatgtg |
34349676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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