View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_6 (Length: 291)
Name: NF10617_low_6
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 46587006 - 46587283
Alignment:
| Q |
1 |
tggttagggttccaataatatcaaatggtatgatgtgtcaaaatgttacaagagaatgggctctactaacttaaaacttaaaggactcataacataactt |
100 |
Q |
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| T |
46587006 |
tggttagggttccaataatatcaaatggtatgatgtgtcaaaatgttacaagagaatgggctctactaacttaaaatttaaaggactcatgacataactt |
46587105 |
T |
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| Q |
101 |
caatcttattatctaataattccaacattaaccggtgtgttatt-nnnnnnnntcctagtctaataaatttggataaaaattgtttgatccc-------- |
191 |
Q |
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| T |
46587106 |
caatcttattatctaataattccaacattaaccggtgtgttattaaaaaaaaatcctagtctaataaatttggataaaaattgtttgatccctacactat |
46587205 |
T |
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| Q |
192 |
---ttactaaatactagatgtcaattgtataaactataaagcatatttaattaatggtgcggaacttcaagccttaatcca |
269 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46587206 |
cgtttactaaa---tagatgtcaattgtataaactataaagcatatttaattaatggtgcggaacttcaagccttactcca |
46587283 |
T |
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