View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10617_low_7 (Length: 288)
Name: NF10617_low_7
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10617_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 4701727 - 4701810
Alignment:
| Q |
195 |
attaagcatccatccaaacgcgtcccccaaataacctcatccaaccagtctcccactctcgtaagtattaattcactatctctg |
278 |
Q |
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| T |
4701727 |
attaagcatccatccaaacgcgtcccccaaataacctcatccaaccagtctcccactctcgtaagtattaattcactatctctg |
4701810 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 4701611 - 4701660
Alignment:
| Q |
79 |
tcattcattgatcaatcatcatgacaactattcatctttcttccactacg |
128 |
Q |
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| T |
4701611 |
tcattcattgatcaatcatcatgacaactattcatctttcttccactacg |
4701660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 4701577 - 4701606
Alignment:
| Q |
19 |
gataacagttgcatgggtgaatagaatatt |
48 |
Q |
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| T |
4701577 |
gataacagttgcatgggtgaatagaatatt |
4701606 |
T |
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