View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10617_low_8 (Length: 282)

Name: NF10617_low_8
Description: NF10617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10617_low_8
NF10617_low_8
[»] chr2 (3 HSPs)
chr2 (1-170)||(4732945-4733115)
chr2 (173-282)||(4736285-4736394)
chr2 (70-170)||(26511105-26511205)
[»] chr6 (4 HSPs)
chr6 (4-170)||(16118418-16118585)
chr6 (26-139)||(20995934-20996048)
chr6 (105-161)||(32054981-32055037)
chr6 (60-151)||(20996801-20996892)
[»] chr7 (4 HSPs)
chr7 (26-151)||(9024955-9025081)
chr7 (65-138)||(22581275-22581348)
chr7 (20-81)||(30334968-30335030)
chr7 (109-172)||(5987697-5987760)
[»] chr8 (2 HSPs)
chr8 (13-170)||(33137403-33137561)
chr8 (62-160)||(33136950-33137048)
[»] chr1 (2 HSPs)
chr1 (32-168)||(12658988-12659123)
chr1 (125-170)||(6396167-6396212)
[»] chr5 (4 HSPs)
chr5 (21-133)||(8589030-8589144)
chr5 (60-170)||(19828081-19828191)
chr5 (10-58)||(19043767-19043815)
chr5 (26-153)||(19828480-19828608)
[»] chr4 (2 HSPs)
chr4 (4-81)||(41982520-41982598)
chr4 (107-170)||(41982597-41982660)
[»] chr3 (2 HSPs)
chr3 (74-170)||(53114193-53114290)
chr3 (37-133)||(27647352-27647449)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4732945 - 4733115
Alignment:
Q  1 aagcaaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgcacgaagaccttggagacta 99  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4732945 aagcaaccacatatttataataacatatgtttgtggatgtagaaaacaaagagaatttatagtggtttttaacacttttgcacgaagaccttggagacta 4733044  T
Q  100 agctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggtt-aaacacgttctttta 170  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  4733045 agctcaacatggatgtaacttca-tttaaacatgcaaaagataataaataacagttaaaacacattctttta 4733115  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 4736285 - 4736394
Alignment:
Q  173 agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatgcggtaagtgatg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  4736285 agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatggggtaagtgaag 4736384  T
Q  273 aagggaagaa 282  Q
     |||||||||    
T  4736385 cagggaagaa 4736394  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 26511205 - 26511105
Alignment:
Q  70 aacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttt 169  Q
    |||||||||||| |||||||||||||||||   ||||||| |||| |  ||||||| ||||||||| ||  ||||||||||  |||||| | ||||||||    
T  26511205 aacacttttgcatgaagaccttggagactacattcaacatagatgaagtttcatttcaaacatgcagaatgtaataaataatagttaaatatgttctttt 26511106  T
Q  170 a 170  Q
    |    
T  26511105 a 26511105  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 16118418 - 16118585
Alignment:
Q  4 caaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagc 102  Q
    ||||| ||||||||||||| | |||| || || | ||||||| |||||||||||| | ||| |||||||| ||||| ||||||||| || |||| || |     
T  16118418 caaccacatatttgtaatagcatatgcttatgaacgtagaaagcaaagagaatttgaagtgatttttaacccttttacacgaagacttttgagattatgt 16118517  T
Q  103 tcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 170  Q
    |||||||| ||| |||||||||||||||||| ||||| |||||||||| |||||||||  ||||||||    
T  16118518 tcaacatgaatgaaacttcattttaaacatggaaaaggtaataaataatggttaaacatattctttta 16118585  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 20996048 - 20995934
Alignment:
Q  26 tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 124  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||  | || |||  |  |||||||||||||||| | | ||||| |||| |||||||||    
T  20996048 tatgcttgtggatgtagaaaacaaattgaatttgaagtggttttgcaaacatttaaataaagaccttggagactatgttgaacattgatggaacttcatt 20995949  T
Q  125 ttaaacatgcaaaag 139  Q
    |||||||||||||||    
T  20995948 ttaaacatgcaaaag 20995934  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 32055037 - 32054981
Alignment:
Q  105 aacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacac 161  Q
    |||||| ||| |||||||| | ||||||||||| ||||||||||||| |||||||||    
T  32055037 aacatgtatgaaacttcatctcaaacatgcaaatgataataaataacagttaaacac 32054981  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 20996801 - 20996892
Alignment:
Q  60 agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataac 151  Q
    |||| |||| |||||||||||||||   | || ||| ||| | |||||||||||| ||||| |||| ||||| ||||||| |||||||||||    
T  20996801 agtgtttttcaacacttttgcacgagatcgttcgaggctacgttcaacatggatgaaactttatttcaaacacgcaaaaggtaataaataac 20996892  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 9024955 - 9025081
Alignment:
Q  26 tatgtttgtggatgtagaaaacaaagaga-attttagtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 124  Q
    ||||||||||||||||||||||| ||||| |||  ||||||||| |||||||||||| ||| ||||||||||||| | | || ||||||| |||||||||    
T  9024955 tatgtttgtggatgtagaaaacagagagatattgaagtggttttcaacacttttgcatgaacaccttggagactacgttgaagatggatgaaacttcatt 9025054  T
Q  125 ttaaacatgcaaaagataataaataac 151  Q
    | ||||||||||||  |||||||||||    
T  9025055 tcaaacatgcaaaaagtaataaataac 9025081  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 22581275 - 22581348
Alignment:
Q  65 tttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaa 138  Q
    ||||||||||||||||| ||||| |||||| |||| | | |||||||||| || ||||||||||||||| ||||    
T  22581275 tttttaacacttttgcatgaagatcttggaaactacggttaacatggatgaaagttcattttaaacatggaaaa 22581348  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 30334968 - 30335030
Alignment:
Q  20 ataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca 81  Q
    ||||| |||| ||||||||||||||||||||||||||||  |||||||||  |||||||||||    
T  30334968 ataacatatgcttgtggatgtagaaaacaaagagaatttcaagtggttttccacacttttgca 30335030  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 5987697 - 5987760
Alignment:
Q  109 tggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttcttttaaa 172  Q
    |||||| |||||| ||| ||||||||||||| ||||||||||| || |||||| || |||||||    
T  5987697 tggatgaaacttcgtttcaaacatgcaaaaggtaataaataacagtcaaacacatttttttaaa 5987760  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 33137403 - 33137561
Alignment:
Q  13 atttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatgg 111  Q
    |||| ||||| | ||| ||||||||| ||||||||||||||||||| | ||||||||  ||||||||||| ||| |  ||||||  || ||| ||||||     
T  33137403 atttataatagcatatatttgtggatatagaaaacaaagagaatttgaagtggttttccacacttttgcatgaataaattggaggttacgctgaacatga 33137502  T
Q  112 atgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 170  Q
    ||| |||||||| | |||||| |||||| |||||||||||  ||||||||||| |||||    
T  33137503 atgaaacttcatgtcaaacattcaaaaggtaataaataacaattaaacacgttttttta 33137561  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 33137048 - 33136950
Alignment:
Q  62 tggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaaca 160  Q
    ||||||| |||||| ||||  || |||||| ||  ||| | |||||||||||| |||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  33137048 tggttttcaacactgttgcctgacgacctttgatgctacgttcaacatggatgaaacttcatttcaaatatgcaaaaggtaataaataaccgttaaaca 33136950  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 12658988 - 12659123
Alignment:
Q  32 tgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaac 130  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||| |||  || | | |||||||||| || ||||||| ||||    
T  12658988 tgtggatgtagaaaacaaagagaatttgaagtggttttcaacacttttgcatgaagaccttcgaggatacgttgaacatggatgaaatttcatttcaaac 12659087  T
Q  131 atgcaaaagataataaataacggttaaacacgttcttt 168  Q
    ||| ||||  ||||||||||  ||||||||| ||||||    
T  12659088 atg-aaaatgtaataaataa-agttaaacacattcttt 12659123  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 6396167 - 6396212
Alignment:
Q  125 ttaaacatgcaaaagataataaataacggttaaacacgttctttta 170  Q
    ||||||||| ||||||||||||||||  ||||||||| ||||||||    
T  6396167 ttaaacatgaaaaagataataaataatagttaaacacattctttta 6396212  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 8589144 - 8589030
Alignment:
Q  21 taacctatgtttgtggatgtagaaaacaaagagaatttta--gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaac 118  Q
    |||| |||||||||| ||||||| |||||| | || ||||  |||||||| |||||||||||| |||||| |||||| |||   | |||||||||| |||    
T  8589144 taacatatgtttgtgcatgtagacaacaaataaaaatttaaggtggttttcaacacttttgcatgaagactttggaggctacattgaacatggatgaaac 8589045  T
Q  119 ttcattttaaacatg 133  Q
    |||||||||||||||    
T  8589044 ttcattttaaacatg 8589030  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 19828191 - 19828081
Alignment:
Q  60 agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaac 159  Q
    |||| |||| ||||||||| || ||| | |||| || ||| | ||||||| |||| | |||||||| ||| ||||||||||||||||||||  |||||||    
T  19828191 agtgattttcaacacttttccatgaaaatcttgaaggctaggttcaacatcgatgaatcttcatttcaaatatgcaaaagataataaataatagttaaac 19828092  T
Q  160 acgttctttta 170  Q
    || ||||||||    
T  19828091 acattctttta 19828081  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 19043767 - 19043815
Alignment:
Q  10 catatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt 58  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  19043767 catatttgtaataacatatgcttgtgggtgtagaaaacaaagagaattt 19043815  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 19828480 - 19828608
Alignment:
Q  26 tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 124  Q
    |||| ||||||| | |||||||||||| ||||| | ||||||||| ||||||||| | ||||||||| ||  ||| | | |||||| ||| || ||| ||    
T  19828480 tatgcttgtggacgaagaaaacaaagacaatttgaagtggtttttcacacttttgaatgaagaccttcgatgctacgttgaacatgcatgaaatttcgtt 19828579  T
Q  125 ttaaacatgcaaaagataataaataacgg 153  Q
    | ||||||||||||| | ||| |||||||    
T  19828580 tcaaacatgcaaaaggttatagataacgg 19828608  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 41982520 - 41982598
Alignment:
Q  4 caaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca 81  Q
    ||||| ||||||||||||| | |||| ||| | ||||||||||||||||||||||  ||||||||||||||||||||||    
T  41982520 caaccacatatttgtaatagcatatgcttgggaatgtagaaaacaaagagaatttgaagtggtttttaacacttttgca 41982598  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 41982597 - 41982660
Alignment:
Q  107 catggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 170  Q
    |||| ||| ||||| |||| ||||||| ||||| ||||||||||| |||||||| |||||||||    
T  41982597 catgaatgaaacttaatttcaaacatgtaaaaggtaataaataacagttaaacatgttctttta 41982660  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 53114193 - 53114290
Alignment:
Q  74 cttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaat-aacggttaaacacgttctttta 170  Q
    ||||| || |||||| || ||||||| | ||||||| |||| || ||||||| ||||||||||| | |||||||| ||| ||||||||||||||||||    
T  53114193 cttttacatgaagacttttgagactacgttcaacatcgatgaaaattcatttcaaacatgcaaatggtaataaataaacagttaaacacgttctttta 53114290  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 27647352 - 27647449
Alignment:
Q  37 atgtagaaaacaaagagaatttt-agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatg 133  Q
    |||||||||||||| |||||||| ||| ||||| |||||||||||| || |||||| ||| ||| | | || |  |||| |||||||||| |||||||    
T  27647352 atgtagaaaacaaaaagaattttaagtagttttcaacacttttgcatgacgacctttgaggctacgttgaatacagatgaaacttcatttcaaacatg 27647449  T

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