View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10618_low_1 (Length: 521)
Name: NF10618_low_1
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10618_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 120 - 515
Target Start/End: Original strand, 37302282 - 37302673
Alignment:
| Q |
120 |
attatttttctctctcaatgtatacagaaaatgtatgagcgtccaaataacaatttt-tcttaaatttatgacgtttaactacaccaaataataccgatc |
218 |
Q |
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|||||||||||||||||||||||| | ||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37302282 |
attatttttctctctcaatgtatata-----tgtataagcgtccaaataacatttttttcttaaatttatgacgtttaactgcaccaaataataccgatc |
37302376 |
T |
|
| Q |
219 |
ttcgaacagtagtacagttctactcattataaacgagatacaattctagtggacgatacctcaacagcaatatcgaattatccaataataaccttttccc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37302377 |
ttcgaacagtagtacagttctactcattataaacgagatacaattctagtggacgatacctcaacagcaatatcgaattatccaataataaccttttccc |
37302476 |
T |
|
| Q |
319 |
atctgtcaagttggcttttaattgatcatatatcctccggcaacctcactaaatgctcactccatctctgtctctaagaggnnnnnnntaacaaaaagaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37302477 |
atctgtcaagttggcttttaattgatcatatatcctccggcaacctcactaaatgctcactccatctctgtctctaagaggaaaaaaataacaaaaagaa |
37302576 |
T |
|
| Q |
419 |
agataccccaacccgtcttattaagaaaataattaaccttggacccatcgctccttttttgtcccctttcttagcttcacaccattaccctatgctt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37302577 |
agataccccaacccgtcttattaagaaaataattaaccttggacccatcgctccttttttgtcccctttcttagcttcacaccattaccctaagctt |
37302673 |
T |
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