View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10618_low_16 (Length: 239)

Name: NF10618_low_16
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10618_low_16
NF10618_low_16
[»] chr6 (10 HSPs)
chr6 (7-173)||(11209079-11209245)
chr6 (9-172)||(11170259-11170422)
chr6 (38-160)||(11275672-11275794)
chr6 (44-174)||(11155994-11156124)
chr6 (44-174)||(11160861-11160991)
chr6 (44-174)||(11196447-11196577)
chr6 (44-174)||(11199437-11199567)
chr6 (44-174)||(11241737-11241867)
chr6 (74-160)||(11315061-11315147)
chr6 (47-117)||(11132721-11132791)
[»] scaffold1207 (1 HSPs)
scaffold1207 (7-173)||(575-741)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 11209079 - 11209245
Alignment:
Q  7 gcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcaca 106  Q
    |||||| ||||||||||||||||| |  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11209079 gcttttacataactccgtcccactaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcaca 11209178  T
Q  107 acatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactcgccaagcact 173  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||| |||||    
T  11209179 acatcatgaatgttactcttcactatcccactatcttctatacacttttctacaatctccatgcact 11209245  T

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Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 11170259 - 11170422
Alignment:
Q  9 ttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaac 108  Q
    |||| ||||||||||||||||| | ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11170259 ttttacataactccgtcccactacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaac 11170358  T
Q  109 atcatgaatgttagtcttcactatcccactatcttttatacacttttctacactcgccaagcac 172  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  11170359 atcatgaattttactcttcactatcccactatcttctatacacttttctacactctccatgcac 11170422  T

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Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 11275672 - 11275794
Alignment:
Q  38 ttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccac 137  Q
    |||||| | |||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||   ||||||||    
T  11275672 ttaatttcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccac 11275771  T
Q  138 tatcttttatacacttttctaca 160  Q
    |||||  ||||||||||||||||    
T  11275772 tatctgctatacacttttctaca 11275794  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 11155994 - 11156124
Alignment:
Q  44 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 143  Q
    |||||||||||| |||  | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11155994 ccgaagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11156093  T
Q  144 ttatacacttttctacactcgccaagcactt 174  Q
    ||||||||||||| ||| || ||| ||||||    
T  11156094 ttatacacttttccacaatctccatgcactt 11156124  T

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Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 11160861 - 11160991
Alignment:
Q  44 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 143  Q
    |||||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11160861 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11160960  T
Q  144 ttatacacttttctacactcgccaagcactt 174  Q
    ||||||||||||||||| || ||| ||||||    
T  11160961 ttatacacttttctacaatctccatgcactt 11160991  T

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Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 11196447 - 11196577
Alignment:
Q  44 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 143  Q
    |||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11196447 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11196546  T
Q  144 ttatacacttttctacactcgccaagcactt 174  Q
    ||||||||||||| ||| || ||| ||||||    
T  11196547 ttatacacttttccacaatctccatgcactt 11196577  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 11199437 - 11199567
Alignment:
Q  44 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 143  Q
    |||||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11199437 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11199536  T
Q  144 ttatacacttttctacactcgccaagcactt 174  Q
    ||||||||||||||||| || ||| ||||||    
T  11199537 ttatacacttttctacaatctccatgcactt 11199567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 11241867 - 11241737
Alignment:
Q  44 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 143  Q
    |||||||||||| |||  | |||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11241867 ccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11241768  T
Q  144 ttatacacttttctacactcgccaagcactt 174  Q
    ||||||||||||| ||| || ||| ||||||    
T  11241767 ttatacacttttccacaatctccatgcactt 11241737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 11315147 - 11315061
Alignment:
Q  74 tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatcttttatacacttttctaca 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||| || ||||||||||| | || |||||||||||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctaca 11315061  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 11132721 - 11132791
Alignment:
Q  47 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat 117  Q
    ||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  11132721 aagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat 11132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 575 - 741
Alignment:
Q  7 gcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcaca 106  Q
    |||||||||||||| ||||| |||   ||  |||||| | |||||||||| ||||||   ||| |||||||||||||| ||||||||||||||||| |||    
T  575 gcttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaacttttacaatccttgtagagccgccaacaaggaca 674  T
Q  107 acatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactcgccaagcact 173  Q
    |||||||||| |||| ||||   |||||||||||||  |||||| |||||||||||| ||| |||||    
T  675 acatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcact 741  T

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