View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10618_low_19 (Length: 236)
Name: NF10618_low_19
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10618_low_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 18789721 - 18789499
Alignment:
| Q |
14 |
ttattgtgatgaattcaacatgtgcacttgtctatacaaaaaagaatcatcaacgtataattgtaatcttgggttgggagcatgcatcaagggtaactgt |
113 |
Q |
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| T |
18789721 |
ttattgtgatgacttcaacatgtgcacttgtttatacaaaaaagaatcatcaacgtataattgtaatcttgggttgggagcatgcatcaagggtaactgt |
18789622 |
T |
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| Q |
114 |
gattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacattcttttgggacttgtactaatggtaatccggatagatgcatttgtcactatgtac |
213 |
Q |
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| T |
18789621 |
gattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacattcttttgggtcttgtactaatggtaatccggatagatgcatttgtcactatgtac |
18789522 |
T |
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| Q |
214 |
cggagtagcttactcagattatt |
236 |
Q |
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| T |
18789521 |
cggagtagcttactcagattatt |
18789499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 18779681 - 18779540
Alignment:
| Q |
17 |
ttgtgatgaattcaacatgtgcacttgtctatacaaaaaagaatcatcaacgtataattgtaatcttgggttgggagcatgcatcaagggtaactgtgat |
116 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
18779681 |
ttgtgatgactccaacatgtgcacttgtctatacaaaaaagaatcatcaacgtatagttgtaatatggggttgggagcatgcatcaagggtaactgtgat |
18779582 |
T |
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| Q |
117 |
tcagtttgttgcagtgcaagatgtgcttcaaaacttaaacat |
158 |
Q |
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| T |
18779581 |
tcaagttgttgcaatgtaagatgtgcttcaaaatttaaacat |
18779540 |
T |
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