View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10618_low_2 (Length: 448)
Name: NF10618_low_2
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10618_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 11847937 - 11848349
Alignment:
| Q |
18 |
gaaagaacctcgttgttatgcagacaaatggtttgaaatagagtgcaaattagacaacaattctcaaaatccaaaaccatatttgaagtctttaaatctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11847937 |
gaaagaacctcgttgttatgcagacaaatggtttgaaatagagtgcaaattagacaacaattctcaaaatccaaaaccatatttgaagtctttaaatctt |
11848036 |
T |
|
| Q |
118 |
gaggtaaataatttttacctggacttaggcttggttgagattatgaatccaattcatcgtccaaactgtcgaaaatataataacaataaaaccgttatta |
217 |
Q |
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| T |
11848037 |
gaggtaaataatttttacctggacttaggcttggttgagattatgaatccaattcatcgtccaaactgtcgaaaatataataacaataaaaccgttatta |
11848136 |
T |
|
| Q |
218 |
taaaccttggaggcggtcctttcatatattcacaggattacaacaaatttctagccgttggatgtaacaatcttgcttttatacaatcaagtggaacaat |
317 |
Q |
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| T |
11848137 |
taaaccttggaggcggtcctttcatatattcacaggattacaacaaatttctagctgttggatgtaacaatcttgcttttatacaatcaagtggaaacat |
11848236 |
T |
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| Q |
318 |
ggttggtggttgtgtatcaatttgcgatgacaacaacataaacagc---tacttcaatttgagtagtaatggttgtaatggaagatattgttgtgaaact |
414 |
Q |
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| T |
11848237 |
ggttggtggttgtgtatcaatttgcgatgacaacaacataaacagcaattacttcaatttgagtagtgatggttgtaatggaagatattgttgtgaaact |
11848336 |
T |
|
| Q |
415 |
tcattgcctatgc |
427 |
Q |
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| T |
11848337 |
tcattgcctatgc |
11848349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 11843255 - 11843661
Alignment:
| Q |
18 |
gaaagaacctcgttgttatgcagacaaatggtttgaaatagagtgcaaattagacaacaattctcaaaatccaaaaccatatttgaagtctttaaatctt |
117 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11843255 |
gaaagaacctcgttgttatgcagacaagtggttcgaaatagagtgcaaattagacaacagttctcaaaatccaaaaccatatttgaagtctttaaatctt |
11843354 |
T |
|
| Q |
118 |
gaggtaaataatttttacctggacttaggcttggttgagattatgaatccaattcatcgtccaaactgtcgaaaatataataacaataaaaccgttatta |
217 |
Q |
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|||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| | ||||||||| | || ||| ||||||||||||||||| || |
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| T |
11843355 |
gaggtaaataatgtttacctagacttaggcatggttgagattatgaatccaatttatcattcaaactgtcaacaaaatattaacaataaaaccgttacta |
11843454 |
T |
|
| Q |
218 |
taaaccttggaggcggtcctttcatatattcacaggattacaacaaatttctagccgttggatgtaacaatcttgcttttatacaatcaagtggaacaat |
317 |
Q |
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| T |
11843455 |
taaaccttggagttagtccttttatgtattcccagagttacaacaaatttctagccgttggatgtaacaatcttgcttttctacaatcaaatggaacaac |
11843554 |
T |
|
| Q |
318 |
ggttggtggttgtgtatcaatttgcgatgacaacaacataaacagctacttcaatttgagtagtaatggttgtaatggaagatattgttgtgaaacttca |
417 |
Q |
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|||||||||||| ||||||||||||||||| |||| | |||| | ||||||||| |||| | |||| ||||||||||||||||||||||||||| |
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| T |
11843555 |
ggttggtggttgcgtatcaatttgcgatgatggcaactttaacaacaacttcaattccagtaacgaccgttgcaatggaagatattgttgtgaaacttca |
11843654 |
T |
|
| Q |
418 |
ttgccta |
424 |
Q |
| |
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| T |
11843655 |
ttgccta |
11843661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 26882478 - 26882560
Alignment:
| Q |
91 |
aaaccatatttgaagtctttaaatcttgaggtaaataatttttacctggacttaggcttggttgagattatgaatccaattca |
173 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||| |||| |||||||| |
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| T |
26882478 |
aaaccttatttgaagtctttaaatcttgaggtaaaacattttaacgattacttaggcatgattgagattttgaacccaattca |
26882560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 26885218 - 26885326
Alignment:
| Q |
20 |
aagaacctcgttgttatgcagacaaatggtttgaaatagagtgcaaattagacaacaa---ttctcaaaatccaaaaccatatttgaagtctttaaatct |
116 |
Q |
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||||||| | ||||||||||| || ||||| ||||||||||| ||||| ||||| || |||| | | ||| ||||| ||||| |||||||||||||| |
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| T |
26885218 |
aagaaccacattgttatgcaggcatgtggttcgaaatagagtgtaaatttgacaaaaaatcttctaatattcctaaaccttatttaaagtctttaaatct |
26885317 |
T |
|
| Q |
117 |
tgaggtaaa |
125 |
Q |
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| T |
26885318 |
tgaggtaaa |
26885326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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