View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10618_low_20 (Length: 235)
Name: NF10618_low_20
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10618_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 46591933 - 46591715
Alignment:
| Q |
1 |
ggaatgacggccttccagggtccgtatagcacatccacgatggagatattcatttatagataattaaatgggtcatacgtgtatatattatttatttgta |
100 |
Q |
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| T |
46591933 |
ggaatgacggccttccagggtccgtataacacatccacggcggagatattcatttataggtaattaaatgggtcatacgtgtatatattatttatttgta |
46591834 |
T |
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| Q |
101 |
annnnnnnaaaggtaatgttaaccaatgtttaaggaaactnnnnnnntgaagttttataaagaaaataacattttttatgctttttaaagagttaataac |
200 |
Q |
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| T |
46591833 |
a-ttttttaaaggtaatgttaaccaatgtttaaggaaactaaaaaaatgaagttttataaagaaaataacattttttatgctttttaaagagttaataaa |
46591735 |
T |
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| Q |
201 |
acaagttttaaggtaatatt |
220 |
Q |
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| T |
46591734 |
acaagtttcaaggtaatatt |
46591715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 38282574 - 38282503
Alignment:
| Q |
148 |
tgaagttttataaagaaaataacattttttatgctttttaaagagttaataacacaagttttaaggtaatatt |
220 |
Q |
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| T |
38282574 |
tgaaattttaaaatgaaaataacactttttata-tttttaaagagttgacaacacaaattttaatgtaatatt |
38282503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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