View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10618_low_3 (Length: 393)
Name: NF10618_low_3
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10618_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 43181329 - 43181695
Alignment:
| Q |
17 |
agtaagcacttaccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctcataca |
116 |
Q |
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| T |
43181329 |
agtaagcacttaccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctcataca |
43181428 |
T |
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| Q |
117 |
tgaacggcccattgtcatgtgacatgccacggaacattctatggtgattaaccttagaatcagcatagatgctcctaaattcgtaattagtcatgtcagc |
216 |
Q |
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| T |
43181429 |
tgaacggcccattgtcatgtgacatgccacggaacattctatggtgattaaccttagaatcagcatagatgctcctaaattcgtaattagtcatgtcagc |
43181528 |
T |
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| Q |
217 |
aaacttattcaacttaagcttataaggtttatctaatttattggtattatgaacatgcataacattggctttgaacacgttaaaacgattattcttctca |
316 |
Q |
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| T |
43181529 |
aaacttattcaacttaagcttataaggtttatctaatttattggtattatgaacatgcataacattggctttgaacacgttaaaacgattattcttctca |
43181628 |
T |
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| Q |
317 |
tcaaggcttcgagtaactgtgtggtgacttctccatctctcgtacaaatcccacaaacttttctctg |
383 |
Q |
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| T |
43181629 |
tcaaggcttcgagtaactgtgtggtgacttctccatctctcgtacaaatcccacaaacttttctctg |
43181695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 377
Target Start/End: Original strand, 34312492 - 34312844
Alignment:
| Q |
25 |
cttaccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctcatacatgaacggc |
124 |
Q |
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| T |
34312492 |
cttaccacattggccttgatccttgacatcagtgacagcacctttctttctccaatcaacagaagcaggagctttggtaaaattctcatacatgaatgtt |
34312591 |
T |
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| Q |
125 |
ccattgtcatgtgacatgccacggaacattctatggtgattaaccttagaatcagcatagatgctcctaaattcgtaattagtcatgtcagcaaacttat |
224 |
Q |
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| T |
34312592 |
ccacttacacgtggcgtgcctcggaacattctgtggtgattaacctttgatccagcataggtagtcttaaattcatggttggtcatgtcggcaaacttgt |
34312691 |
T |
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| Q |
225 |
tcaacttaagcttataaggtttatctaatttattggtattatgaacatgcataacattggctttgaacacgttaaaacgattattcttctcatcaaggct |
324 |
Q |
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| T |
34312692 |
taagtttcaacttgtaaggcttatccattttgttagtgttgtggacatgcatcacatttgatttgaacacgttaaagcgcttttgtttctcgttgaggtt |
34312791 |
T |
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| Q |
325 |
tcgagtaactgtgtggtgacttctccatctctcgtacaaatcccacaaacttt |
377 |
Q |
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| T |
34312792 |
ccgagaaaccgtgtgatgactcctccatctctcgtataagtcccacaagcttt |
34312844 |
T |
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