View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10618_low_6 (Length: 370)
Name: NF10618_low_6
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10618_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 1427761 - 1428112
Alignment:
| Q |
1 |
ccacctttcagcttagcctcgcgcttcaaactaatcaactctctttcctacacaatacaaaataaaaccacaacacaattgattagtgagcaaaaattaa |
100 |
Q |
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| T |
1427761 |
ccacctttcagcttagcctcgcgcttcaaactaatcaactctctttcctacacaatacaaaataaaaccacaacacaattgattagtgagaaaaaattaa |
1427860 |
T |
|
| Q |
101 |
taaatatccagaactatcagtataaatagaaaaggatgaaaaaa--ccatttaagagcactgcagtgacatgagaagtaccttatcctcatactcctgag |
198 |
Q |
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| T |
1427861 |
taaatatccagaactatcactataaatcgaaaacaatgaaaaaaaaccatttaagag----------acatgagaagtaccttatcctcatactcctgag |
1427950 |
T |
|
| Q |
199 |
aatattgcttagccctactgtaaatcagcttacggttctcggctctcttcttcttagaagcttcagattcttgagttttagccaaagcccattgttcttc |
298 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1427951 |
aatactgcttagccctactgtaaatcagcttacggttctcggctctcttcttcttagaagcttcagattcttgagttttagccaaagcccattgttcttc |
1428050 |
T |
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| Q |
299 |
cctgttctgcttcttcaacacagactcaagaacaatagatttcacttcttcacccatctctg |
360 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1428051 |
cctgttctgcttcttcaacacagactcaggaacaatagatttcacttcttcacccatctctg |
1428112 |
T |
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