View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10618_low_8 (Length: 336)
Name: NF10618_low_8
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10618_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 49675314 - 49675022
Alignment:
| Q |
14 |
agagagacactagatttctgtggcgcaatcgagtgaggattttgatttcattcatgaactgttcaactcgtttaaagttgtgttgaaataagcgcttcac |
113 |
Q |
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| T |
49675314 |
agagagaaactagatttctgtggcgcaatcgagtgaggattttgatttcattcatgaactgttcaactcgtttaaagttgtgctgaaataagcgcttcac |
49675215 |
T |
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| Q |
114 |
agcaacttcacgtccatctttgagttttcctggttgttaaagatgaaagcaagagttattatttacttataactacagggaagttctaattaaacctacc |
213 |
Q |
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| T |
49675214 |
agcaacttcacgtccatctttgagttttcctggttgttaaagatgaaagcaagagttattatttacttataactacagggaagttctaattaaacctacc |
49675115 |
T |
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| Q |
214 |
gccttttcatagatagtagagtttgtgagtgctacacataccgtaataaacagtgccaaatcctccttctccaagttctcttgaactgtcaaa |
306 |
Q |
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| T |
49675114 |
gccttttcatagatagtagagtttgtgagtgctacacataccgtaataaacagtgccaaatcctccttctccaagttctcttgaactgtcaaa |
49675022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 49671071 - 49670977
Alignment:
| Q |
58 |
atttcattcatgaactgttcaactcgtttaaagttgtgttgaaataagcgcttcacagcaacttcacgtccatctttgagttttcctggttgtta |
152 |
Q |
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| T |
49671071 |
atttcattcgtgaactgttctactcgcctccagttatgttcatataggcgcttcacagcaacttctcgtccatcgtgcagttttcctggttgtta |
49670977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 49667102 - 49667025
Alignment:
| Q |
55 |
ttgatttcattcatgaactgttcaactcgtttaaagttgtgttgaaataagcgcttcacagcaacttcacgtccatct |
132 |
Q |
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| T |
49667102 |
ttgacttcattcatgaactgctctactctcctatagttgtgttcatataaacgcttgacagcaacttcacgtccatct |
49667025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 22783331 - 22783275
Alignment:
| Q |
100 |
aataagcgcttcacagcaacttcacgtccatctttgagttttcctggttgttaaaga |
156 |
Q |
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| T |
22783331 |
aataggcgcttcactgcaacttcacgtccatctacaagctttcctggttgttaaaga |
22783275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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