View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10618_low_9 (Length: 327)

Name: NF10618_low_9
Description: NF10618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10618_low_9
NF10618_low_9
[»] chr1 (5 HSPs)
chr1 (1-313)||(34661944-34662256)
chr1 (246-311)||(49242959-49243025)
chr1 (246-292)||(6166212-6166258)
chr1 (246-292)||(11023307-11023353)
chr1 (246-291)||(6061246-6061291)
[»] chr6 (2 HSPs)
chr6 (248-292)||(10826170-10826214)
chr6 (246-300)||(21254855-21254910)
[»] chr5 (3 HSPs)
chr5 (252-308)||(19239350-19239406)
chr5 (246-292)||(24045923-24045969)
chr5 (261-308)||(4292225-4292273)
[»] chr3 (3 HSPs)
chr3 (261-292)||(29716677-29716708)
chr3 (261-300)||(30811523-30811563)
chr3 (248-292)||(53074981-53075025)
[»] chr2 (2 HSPs)
chr2 (246-300)||(25747856-25747911)
chr2 (246-300)||(36548278-36548333)
[»] chr8 (3 HSPs)
chr8 (246-292)||(3097182-3097228)
chr8 (246-311)||(38114511-38114577)
chr8 (248-307)||(36114019-36114079)
[»] chr4 (2 HSPs)
chr4 (246-292)||(9893775-9893821)
chr4 (246-292)||(28987082-28987128)
[»] chr7 (3 HSPs)
chr7 (243-292)||(36920138-36920187)
chr7 (248-300)||(47217506-47217559)
chr7 (251-292)||(48134679-48134720)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 34662256 - 34661944
Alignment:
Q  1 aagggaatcttccacttttactgaggtaagagctaaagcagatagttacagttataggcccaccataccacacatttgcttcacgacacaaaacacagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34662256 aagggaatcttccacttttactgaggtaagagctaaagcagatagttacagttataggcccaccataccacacatttgcttcacgacacaaaacacacag 34662157  T
Q  101 gctttagtgacctatgcatccataatgttgtctatgaaagtgagacaccactttccccatgctgtgcgcaccgcaacctcaaacttgtgttagtttatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34662156 gctttagtgacctatgcatccataatgttgtctatgaaagtgagacaccactttccccatgctgtgcgcaccgcaacctcaaacttgtgttagtttatgc 34662057  T
Q  201 ggtccattgcgattatatccggtttagtgtatgttttatcatgctgtggtgaaaattaagtttgataaaattgaatttgagagaattgatttgattaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34662056 ggtccattgcgattatatccggtttagtgtatgttttattatgtggtggtgaaaattaagtttgataaaattgagtttgagagaattgatttgattaaaa 34661957  T
Q  301 ataagttggattt 313  Q
    || ||||| ||||    
T  34661956 atgagttgaattt 34661944  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 49242959 - 49243025
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattga-tttgattaaaaataagttggat 311  Q
    ||||||| |||||| ||||||| |||||| |||||||||||||| |||| |||||||| ||||||||    
T  49242959 gtggtgagaattaattttgatataattgagtttgagagaattgattttggttaaaaatgagttggat 49243025  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 6166258 - 6166212
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    ||||||| |||| | ||||||| ||||||||||||||||||||||||    
T  6166258 gtggtgagaattgattttgatagaattgaatttgagagaattgattt 6166212  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 11023307 - 11023353
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    |||||||||||| | ||||||| |||||| |||||||||||||||||    
T  11023307 gtggtgaaaattgattttgatagaattgagtttgagagaattgattt 11023353  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 6061291 - 6061246
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattgatt 291  Q
    |||||||||||| | ||||||| |||||||||||||| ||||||||    
T  6061291 gtggtgaaaattgattttgatagaattgaatttgagataattgatt 6061246  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 10826214 - 10826170
Alignment:
Q  248 ggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||    
T  10826214 ggtgagaattaattttgataaaattgagtttgagagaattgattt 10826170  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 21254855 - 21254910
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattg-atttgattaaaa 300  Q
    ||||||| |||| ||||||||| |||||| ||||||||||||| ||||||||||||    
T  21254855 gtggtgataattgagtttgatagaattgagtttgagagaattgaatttgattaaaa 21254910  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 19239406 - 19239350
Alignment:
Q  252 aaaattaagtttgataaaattgaatttgagagaattgatttgattaaaaataagttg 308  Q
    |||||||| ||||||| |||||| |||||||||||   |||||||||||||||||||    
T  19239406 aaaattaaatttgatagaattgattttgagagaatgattttgattaaaaataagttg 19239350  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 24045969 - 24045923
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    ||||||| |||| | ||||||| ||||||||||||||||||||||||    
T  24045969 gtggtgagaattgattttgatagaattgaatttgagagaattgattt 24045923  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 4292273 - 4292225
Alignment:
Q  261 tttgataaaattgaatttgagagaattga-tttgattaaaaataagttg 308  Q
    ||||||| |||| | |||||||||||||| |||||||||||||||||||    
T  4292273 tttgatagaattaagtttgagagaattgattttgattaaaaataagttg 4292225  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 29716677 - 29716708
Alignment:
Q  261 tttgataaaattgaatttgagagaattgattt 292  Q
    ||||||||||||||||||||||||||||||||    
T  29716677 tttgataaaattgaatttgagagaattgattt 29716708  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 30811523 - 30811563
Alignment:
Q  261 tttgataaaattgaatttgagagaattga-tttgattaaaa 300  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  30811523 tttgatataattgaatttgagagaattgattttgattaaaa 30811563  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 53075025 - 53074981
Alignment:
Q  248 ggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    |||||||||| | ||||||| |||||| |||||||||||||||||    
T  53075025 ggtgaaaattgattttgatataattgagtttgagagaattgattt 53074981  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 25747856 - 25747911
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattga-tttgattaaaa 300  Q
    ||||||| |||| ||||||||| |||||| |||||||||||||| |||||||||||    
T  25747856 gtggtgataattgagtttgatagaattgagtttgagagaattgattttgattaaaa 25747911  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 36548333 - 36548278
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattga-tttgattaaaa 300  Q
    |||||||||||| | ||||||| |||||| |||||||||||||| |||||||||||    
T  36548333 gtggtgaaaattgattttgatagaattgagtttgagagaattgattttgattaaaa 36548278  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 3097182 - 3097228
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    ||||||| |||||| ||||||| |||||| |||||||||||||||||    
T  3097182 gtggtgagaattaattttgatagaattgagtttgagagaattgattt 3097228  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 38114577 - 38114511
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattga-tttgattaaaaataagttggat 311  Q
    ||||||| |||| | ||||||| |||||| |||||||||||||| |||| |||||| ||||||||||    
T  38114577 gtggtgagaatttattttgatagaattgagtttgagagaattgattttggttaaaagtaagttggat 38114511  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 36114019 - 36114079
Alignment:
Q  248 ggtgaaaattaagtttgataaaattgaatttgagagaattga-tttgattaaaaataagtt 307  Q
    ||||| |||| | ||||||| |||||| |||||||||||||| ||||||||||| ||||||    
T  36114019 ggtgagaattgattttgatagaattgagtttgagagaattgattttgattaaaagtaagtt 36114079  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 9893821 - 9893775
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    ||||||| |||| | ||||||| ||||||||||||||||||||||||    
T  9893821 gtggtgagaattgattttgatagaattgaatttgagagaattgattt 9893775  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 28987128 - 28987082
Alignment:
Q  246 gtggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    |||||||||||| | ||||||| |||||| |||||||||||||||||    
T  28987128 gtggtgaaaattgattttgatagaattgagtttgagagaattgattt 28987082  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 36920138 - 36920187
Alignment:
Q  243 gctgtggtgaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    |||| ||||| |||||| |||||||||||||| ||||| |||||||||||    
T  36920138 gctgcggtgagaattaattttgataaaattgagtttgaaagaattgattt 36920187  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 47217506 - 47217559
Alignment:
Q  248 ggtgaaaattaagtttgataaaattgaatttgagagaattga-tttgattaaaa 300  Q
    |||||||||| | ||||||| |||||| |||||||||||||| |||||||||||    
T  47217506 ggtgaaaattgattttgatagaattgagtttgagagaattgattttgattaaaa 47217559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 48134720 - 48134679
Alignment:
Q  251 gaaaattaagtttgataaaattgaatttgagagaattgattt 292  Q
    ||||||||| ||||||| |||||| |||||||||||||||||    
T  48134720 gaaaattaattttgatagaattgagtttgagagaattgattt 48134679  T

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