View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10619_high_1 (Length: 427)
Name: NF10619_high_1
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 7109912 - 7109577
Alignment:
| Q |
1 |
ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttaaatttnnnnnnntggagatcgaacagtttataaatgagacgacttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||| |
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| T |
7109912 |
ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttagatttaaaaaaatggagattgaacagtttataaacgagacgacttat |
7109813 |
T |
|
| Q |
101 |
aaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcct-----tgattttgttg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7109812 |
aaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcctatggttgattttgttg |
7109713 |
T |
|
| Q |
196 |
attggaaggaggctaatcaacttatccatcttcctactagaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatataatataa |
295 |
Q |
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| T |
7109712 |
attggaaggaggctaatcaacttatccatcttcctaccaaaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatataatataa |
7109613 |
T |
|
| Q |
296 |
atgactcgatagagccatttgcaatcaacaatggct |
331 |
Q |
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| T |
7109612 |
gtgacttgacagagccatttgcaatcaacaatggct |
7109577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 7109285 - 7109213
Alignment:
| Q |
333 |
atttcttccaaacttattggaacaatgtgaataatgatgtaactaatgcggttttaaatttctttgtagatga |
405 |
Q |
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| T |
7109285 |
atttcttccaaacttattggaacaatgtgaatactgatgtaactaatgcggttttaaatttctttgtagatga |
7109213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 7110772 - 7110878
Alignment:
| Q |
66 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttga |
165 |
Q |
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| T |
7110772 |
tggaggtcaaacaatttataaacgaggcgacttataaatagattacattaagattttgagttaaattgtgatgtttctcttacatgtgtggttgcttcga |
7110871 |
T |
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| Q |
166 |
accaaat |
172 |
Q |
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||||||| |
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| T |
7110872 |
accaaat |
7110878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 9987749 - 9987640
Alignment:
| Q |
74 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaata |
173 |
Q |
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||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||| ||||| |
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| T |
9987749 |
gaacaatttataaacaagacgagttataaacacattacattaaggttttgggttaact-gtgatgtctctcttacatgtgtgattgctttgaagcaaatg |
9987651 |
T |
|
| Q |
174 |
tggatgatcct |
184 |
Q |
| |
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|||| |||||| |
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| T |
9987650 |
tggacgatcct |
9987640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 9986561 - 9986483
Alignment:
| Q |
66 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctc |
144 |
Q |
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| T |
9986561 |
tggaggtcaaacaatttataaatgatgcgacttataaacacattacattaaagttttgggataaattatgatgtctctc |
9986483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 9992790 - 9992710
Alignment:
| Q |
72 |
tcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgt |
154 |
Q |
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| T |
9992790 |
tcgaacaatttataaacaagacgacttataaacacattacattaagg-tttaagtt-aactatgatgtctcttttacatgtgt |
9992710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 9991811 - 9991728
Alignment:
| Q |
83 |
ataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaa |
166 |
Q |
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| T |
9991811 |
ataaacgagacgatttctaagcatattacattaaagttttgggttaaattgtgatgtatcccttagtggtgtggttgctttgaa |
9991728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26169914 - 26169962
Alignment:
| Q |
1 |
ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggc |
49 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| | ||||||||| |
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| T |
26169914 |
ggggattaggccaaaaccccctcaaaaaggaacaaatctgaagttaggc |
26169962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 29873648 - 29873561
Alignment:
| Q |
74 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
161 |
Q |
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||||| ||||||| || || |||| |||||| |||| | |||||||||||||| | | ||||| |||||||| || |||||||||||| |
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| T |
29873648 |
gaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtggttgct |
29873561 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 15841477 - 15841390
Alignment:
| Q |
74 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
161 |
Q |
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||||| ||| ||| ||||| || | ||||||||||| | ||||||||||| || | | |||||||||||||| || |||||||||||| |
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| T |
15841477 |
gaacactttgtaagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtgatgtctctctcacttgtgtggttgct |
15841390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 16524451 - 16524499
Alignment:
| Q |
113 |
ttaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
161 |
Q |
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|||||||||||||| | | |||| |||||||||||| |||||||||||| |
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| T |
16524451 |
ttaaggttttgagtaagagtgtggtgtctctcttacttgtgtggttgct |
16524499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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