View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10619_low_14 (Length: 259)
Name: NF10619_low_14
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_low_14 |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 18086564 - 18086341
Alignment:
| Q |
11 |
gatgaagatgaagatcatcaagcactaataatggttggattacattttatttactttcttgaaacaacagtcacataaaaaacaatatgtctgtgtggag |
110 |
Q |
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| T |
18086564 |
gatgaagatgaagatcatcaagcactaataatggttgaattacattttatttactttcttgaaacaacagtcacataaaaaacaatatatctgtgtggag |
18086465 |
T |
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| Q |
111 |
aagaaggtttgtggaatatgagagagtgaagagaaagaaaggagtgtaaaactgtggatgttgagattgaaagcataaatggtggtgggttgttataagt |
210 |
Q |
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| T |
18086464 |
aagaagggttgtggaatatgagagagtgaagagaaagaaaggagtgtaaaactgtggatgttgagattgaaaacatcaatggtggtgggttgttagaagt |
18086365 |
T |
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| Q |
211 |
gttgggttagagaaggagaggctg |
234 |
Q |
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| T |
18086364 |
gttgggttagagaaggagaggctg |
18086341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 5106669 - 5106524
Alignment:
| Q |
44 |
gttggattacattttatttactttcttgaaacaacagtcacataaaaaacaatatgtctgtgtggagaagaaggtttgtggaatatgagagagtgaagag |
143 |
Q |
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| T |
5106669 |
gttggattaaattttgtttactttgttgaaacaacagtcacgtaaaaaaca---tgtatgtgtggagaagaaggattgtgggagatgggagagtgaagag |
5106573 |
T |
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| Q |
144 |
aaagaaaggagtgtaaaactgtggatgttgagattgaaagcataaatgg |
192 |
Q |
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| T |
5106572 |
aaagcaaggagtctataactatggatgtagagattgaaagcatcaatgg |
5106524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 16331959 - 16332152
Alignment:
| Q |
11 |
gatgaagatgaagatcatcaagcactaataatggttggattacattttatttactttcttgaaacaacagtcacataaaaaacaatatgtctgtgtggag |
110 |
Q |
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| T |
16331959 |
gatgaagataaagatcatcaagcactaacaatggttggattacattttatttactttcttgaaacaacagtcacataaaaaaatatatgtctgtgtggag |
16332058 |
T |
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| Q |
111 |
aagaaggtttgtggaatatgagagagtgaagagaaagaaaggagtgtaaaactgtggatgttgagattgaaagcataaatggtggtgggttgtt |
204 |
Q |
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| T |
16332059 |
aagaaggtttgtggaagatggaagagtgaagcgaaagaaaggagtgtaaaactgtggatgttgagattgaaagcatcaatggaggttggttgtt |
16332152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 16129361 - 16129145
Alignment:
| Q |
11 |
gatgaagatgaagatcatcaagcactaataatggttggattacattttatttactttcttgaaacaacagtcacataaaaaa----caatatgtctgtgt |
106 |
Q |
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| T |
16129361 |
gatgaagataaagatcatcaaacactaacaatggttggattgcattttatttactttcttgaaacaatagtcacataaaaaaaaaacaatatgtctgtgt |
16129262 |
T |
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| Q |
107 |
ggagaagaaggtttgtggaatatgagagagtgaagagaaagaaaggagtgtaaaactgtggatgttgagattgaaagcataaatggtggtgggttgttat |
206 |
Q |
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| T |
16129261 |
ggagaagaaggtttgtggaagatgggagagtgaagagaaagaaatgagtgtaaaattgtggatgttgagattgaaagcatcaatggaggttggttgttgg |
16129162 |
T |
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| Q |
207 |
aagtgttgggttagaga |
223 |
Q |
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| T |
16129161 |
aagtgttgagtgagaga |
16129145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 38100 - 37930
Alignment:
| Q |
11 |
gatgaagatgaagatcatcaagcactaataatggttggattacattttatttactttcttgaaacaacagtcacataaaaaacaatatgtctgtgtggag |
110 |
Q |
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|||||| ||||||||||||||| | || ||||||||||||| ||||| |||||||| ||||||||||||||| ||||||| | |||| ||||||||| |
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| T |
38100 |
gatgaatatgaagatcatcaagtataaacaatggttggattaaattttgtttactttgttgaaacaacagtcatgtaaaaaa--acatgtatgtgtggag |
38003 |
T |
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| Q |
111 |
aagaaggtttgtggaatatgagagagtgaagagaaagaaaggagtgtaaaactgtggatgttgagattgaaag |
183 |
Q |
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| T |
38002 |
aagaaagattgtgggagatgggagagtgaagagagagcaaggagtgtaaaactacggatgtagagattgaaag |
37930 |
T |
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