View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10619_low_15 (Length: 254)

Name: NF10619_low_15
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10619_low_15
NF10619_low_15
[»] chr8 (10 HSPs)
chr8 (11-110)||(33837403-33837501)
chr8 (213-254)||(10902988-10903029)
chr8 (162-224)||(10904464-10904527)
chr8 (213-254)||(17564497-17564538)
chr8 (213-254)||(33691745-33691786)
chr8 (219-254)||(14333949-14333984)
chr8 (185-224)||(33690399-33690438)
chr8 (185-220)||(36369864-36369899)
chr8 (220-254)||(19127329-19127363)
chr8 (213-254)||(19147544-19147585)
[»] chr5 (4 HSPs)
chr5 (213-254)||(3523155-3523196)
chr5 (213-247)||(28747551-28747585)
chr5 (213-254)||(26818456-26818497)
chr5 (218-254)||(31069140-31069176)
[»] chr1 (8 HSPs)
chr1 (213-254)||(24186652-24186693)
chr1 (215-254)||(34387642-34387681)
chr1 (213-254)||(27842645-27842686)
chr1 (213-254)||(34393625-34393666)
chr1 (218-254)||(15649205-15649241)
chr1 (185-224)||(8066717-8066756)
chr1 (218-254)||(790094-790130)
chr1 (213-253)||(22871241-22871281)
[»] chr6 (4 HSPs)
chr6 (162-224)||(27597388-27597451)
chr6 (213-254)||(17154381-17154422)
chr6 (213-254)||(33702565-33702606)
chr6 (185-221)||(33703832-33703868)
[»] chr4 (6 HSPs)
chr4 (219-254)||(16048158-16048193)
chr4 (213-254)||(23516104-23516145)
chr4 (213-254)||(46171634-46171675)
chr4 (185-223)||(6583940-6583978)
chr4 (213-254)||(6582333-6582374)
chr4 (214-254)||(26460712-26460752)
[»] scaffold0488 (2 HSPs)
scaffold0488 (176-224)||(6093-6142)
scaffold0488 (213-249)||(7474-7510)
[»] chr7 (5 HSPs)
chr7 (185-226)||(32747060-32747101)
chr7 (218-254)||(33382451-33382487)
chr7 (218-254)||(45067628-45067664)
chr7 (218-249)||(45920156-45920187)
chr7 (215-248)||(40474374-40474407)
[»] chr3 (4 HSPs)
chr3 (185-224)||(44772775-44772814)
chr3 (213-254)||(5938157-5938198)
chr3 (213-254)||(10223098-10223139)
chr3 (218-254)||(44774042-44774078)
[»] chr2 (3 HSPs)
chr2 (185-224)||(2152963-2153002)
chr2 (185-224)||(41193372-41193411)
chr2 (213-254)||(31365492-31365533)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 33837403 - 33837501
Alignment:
Q  11 cataggtcattaaagttaaagaacaaattttttaatcaaatggctctagggtgacccacctttaaaagaacaaactaccaaaaaagtaagttcgtccttt 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  33837403 cataggtcattaaagttaaagaacaaatttt-taatcaaatggctctagggtaacccacctttaaaagaacaaactaccaaaaaagcaagttcgtccttt 33837501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 10902988 - 10903029
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  10902988 cgaaccgaaccgaaattttgaaatggttcgggaaaaccgaac 10903029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 10904527 - 10904464
Alignment:
Q  162 aaccgtgcgaatcaaactgaaccaaaa-taaccgaaccattataatagttcacgaatcgaaccg 224  Q
    ||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||| |||||||    
T  10904527 aaccgcgcgaaccaaaccgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccg 10904464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 17564538 - 17564497
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  17564538 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaac 17564497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 33691786 - 33691745
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  33691786 cgaaccgaatcgaaattttgaaatggttcgggaaaaccgaac 33691745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 14333949 - 14333984
Alignment:
Q  219 gaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||||||||||||||||||| |||||||||||    
T  14333949 gaaccgaaattttgaaatggttcgagaaaaccgaac 14333984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 33690399 - 33690438
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaaccg 224  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  33690399 aaaataaccgaaccattataatggttcacgaaccgaaccg 33690438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 36369899 - 36369864
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcga 220  Q
    |||||||||||||||||||||||| |||||||||||    
T  36369899 aaaataaccgaaccattataatagatcacgaatcga 36369864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 19127329 - 19127363
Alignment:
Q  220 aaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||||||||||||| ||||||||||||||||    
T  19127329 aaccgaaattttgaaatgattcgggaaaaccgaac 19127363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 19147544 - 19147585
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||||||||||||||||| ||||||||||| ||||    
T  19147544 cgaaccgaaccgaaattttgaaatgattcgggaaaactgaac 19147585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 3523155 - 3523196
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  3523155 cgaatcgaaccgaaattttgaaatggttcgggaaaatcgaac 3523196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 28747551 - 28747585
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaa 247  Q
    ||||||||||||||||||||||||||||| |||||    
T  28747551 cgaatcgaaccgaaattttgaaatggttcaggaaa 28747585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 26818497 - 26818456
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||| |||||||||||||||||||||||| |||||    
T  26818497 cgaaccgaaccaaaattttgaaatggttcgggaaaatcgaac 26818456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 31069140 - 31069176
Alignment:
Q  218 cgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||||||||||||||||||||| |||| |||||    
T  31069140 cgaaccgaaattttgaaatggttcggaaaaatcgaac 31069176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 24186652 - 24186693
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  24186652 cgaaccgaaccgaaattttgaaatggttcgggaaaaccgaac 24186693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 34387681 - 34387642
Alignment:
Q  215 aatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  34387681 aatcgaaccgaaattttgaaatggtttgggaaaaccgaac 34387642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 27842686 - 27842645
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  27842686 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaac 27842645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 34393625 - 34393666
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  34393625 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaac 34393666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 15649241 - 15649205
Alignment:
Q  218 cgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15649241 cgaaccgaaattttgaaatggttcgggaaaatcgaac 15649205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 8066756 - 8066717
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaaccg 224  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  8066756 aaaataaccgaaccattataatggttcacgaaccgaaccg 8066717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 790094 - 790130
Alignment:
Q  218 cgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  790094 cgaaccgaaattttgaaatggttcgagaaaatcgaac 790130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 22871241 - 22871281
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaa 253  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  22871241 cgaattgaaccgaaattttgatatggtttgggaaaaccgaa 22871281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 27597451 - 27597388
Alignment:
Q  162 aaccgtgcgaatcaaactgaaccaaaa-taaccgaaccattataatagttcacgaatcgaaccg 224  Q
    ||||| ||||| | ||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  27597451 aaccgcgcgaaccgaactgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccg 27597388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 17154422 - 17154381
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  17154422 cgaaccgaaccgaaattttgaaatggttcaggaaaaccgaac 17154381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 33702565 - 33702606
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  33702565 cgaaccgaaccgaaattttgaaatggtttgggaaaaccgaac 33702606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 33703868 - 33703832
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaa 221  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  33703868 aaaataaccgaaccattataatggttcacgaaccgaa 33703832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 16048193 - 16048158
Alignment:
Q  219 gaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  16048193 gaaccgaaattttgaaatggttcgggaaaaccgaac 16048158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 23516104 - 23516145
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  23516104 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaac 23516145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 46171634 - 46171675
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  46171634 cgaaccgaaccgaaattttgaaatggtttgggaaaaccgaac 46171675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 6583978 - 6583940
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaacc 223  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  6583978 aaaataaccgaaccattataatggttcacgaaccgaacc 6583940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 6582333 - 6582374
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||| ||||||||||||| ||||||||||||||||    
T  6582333 cgaaccgaaccaaaattttgaaatgattcgggaaaaccgaac 6582374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 26460712 - 26460752
Alignment:
Q  214 gaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||| |||||||||||||||||| |||||||| ||||    
T  26460712 gaatcgaatcgaaattttgaaatggtttgggaaaactgaac 26460752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 6093 - 6142
Alignment:
Q  176 aactgaaccaaaa-taaccgaaccattataatagttcacgaatcgaaccg 224  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  6093 aactgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccg 6142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 7510 - 7474
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaac 249  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7510 cgaaccgaaccgaaattttgaaatggttcgggaaaac 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 32747101 - 32747060
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaaccgaa 226  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  32747101 aaaataaccgaaccattataatggttcacgaaccgaaccgaa 32747060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 33382487 - 33382451
Alignment:
Q  218 cgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    ||||||| |||||||||||||||||||||||||||||    
T  33382487 cgaaccgtaattttgaaatggttcgggaaaaccgaac 33382451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 45067664 - 45067628
Alignment:
Q  218 cgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||||||||||||||||||||||||||| ||||    
T  45067664 cgaaccgaaattttgaaatggttcgggaaaactgaac 45067628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 45920187 - 45920156
Alignment:
Q  218 cgaaccgaaattttgaaatggttcgggaaaac 249  Q
    ||||||||||||||||||||||||||||||||    
T  45920187 cgaaccgaaattttgaaatggttcgggaaaac 45920156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 40474374 - 40474407
Alignment:
Q  215 aatcgaaccgaaattttgaaatggttcgggaaaa 248  Q
    ||||||| ||||||||||||||||||||||||||    
T  40474374 aatcgaatcgaaattttgaaatggttcgggaaaa 40474407  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 44772775 - 44772814
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaaccg 224  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  44772775 aaaataaccgaatcattataatagttcacgaaccgaaccg 44772814  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 5938198 - 5938157
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||||||||||||||||||||||| ||||| ||||    
T  5938198 cgaaccgaaccgaaattttgaaatggttcggaaaaactgaac 5938157  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 10223139 - 10223098
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| |||||| |||||||||||||||||||||||| |||||    
T  10223139 cgaaccgaaccaaaattttgaaatggttcgggaaaatcgaac 10223098  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 44774078 - 44774042
Alignment:
Q  218 cgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||||||||||||||||||||||||  ||||||||||    
T  44774078 cgaaccgaaattttgaaatggttcgcaaaaaccgaac 44774042  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 2152963 - 2153002
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaaccg 224  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  2152963 aaaataaccgaaccattataatggttcacgaaccgaaccg 2153002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 41193372 - 41193411
Alignment:
Q  185 aaaataaccgaaccattataatagttcacgaatcgaaccg 224  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  41193372 aaaataaccgaaccattataatggttcacgaaccgaaccg 41193411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 31365492 - 31365533
Alignment:
Q  213 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaac 254  Q
    |||| ||||||||||||||||||||||| ||||||| |||||    
T  31365492 cgaaccgaaccgaaattttgaaatggtttgggaaaatcgaac 31365533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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