View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10619_low_17 (Length: 250)
Name: NF10619_low_17
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4141927 - 4141691
Alignment:
| Q |
1 |
tgctagaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatgg |
100 |
Q |
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| T |
4141927 |
tgctagaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatgg |
4141828 |
T |
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| Q |
101 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaat |
200 |
Q |
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| T |
4141827 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaat |
4141728 |
T |
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| Q |
201 |
tatgcattgcattatatggttctttgtttggttttct |
237 |
Q |
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| T |
4141727 |
tatgcattgcattatatggttctttgtttggttttct |
4141691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
| Q |
60 |
ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca |
154 |
Q |
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| T |
3754937 |
ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt |
3755036 |
T |
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| Q |
155 |
ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca |
206 |
Q |
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| T |
3755037 |
ggttttttttctc---tcatacattacatttgatatagttcacaattttgca |
3755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 4157727 - 4157675
Alignment:
| Q |
11 |
tagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatg |
66 |
Q |
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| T |
4157727 |
tagatgtagtgct--gtcacttgagcataggattatttccca-gaaaggttacatg |
4157675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 11082196 - 11082317
Alignment:
| Q |
97 |
atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca |
196 |
Q |
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| T |
11082196 |
atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca |
11082295 |
T |
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| Q |
197 |
caattatgcattgcattatatg |
218 |
Q |
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| T |
11082296 |
caattatgcattacgttatatg |
11082317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
101 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
174 |
Q |
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| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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